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2IWV
Biol. Unit 4
Info
Asym.Unit (521 KB)
Biol.Unit 1 (130 KB)
Biol.Unit 2 (134 KB)
Biol.Unit 3 (132 KB)
Biol.Unit 4 (122 KB)
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(1)
Title
:
STRUCTURE OF THE MONOMERIC OUTER MEMBRANE PORIN OMPG IN THE OPEN AND CLOSED CONFORMATION
Authors
:
O. Yildiz, K. R. Vinothkumar, P. Goswami, W. Kuehlbrandt
Date
:
04 Jul 06 (Deposition) - 14 Aug 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Transmembrane, Outer Membrane, Ion Channel, Porin, Membrane, Transport, Ion Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Yildiz, K. R. Vinothkumar, P. Goswami, W. Kuhlbrandt
Structure Of The Monomeric Outer-Membrane Porin Ompg In The Open And Closed Conformation.
Embo J. V. 25 3702 2006
[
close entry info
]
Hetero Components
(1, 26)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1aa: CALCIUM ION (CAaa)
1ab: CALCIUM ION (CAab)
1ac: CALCIUM ION (CAac)
1ad: CALCIUM ION (CAad)
1ae: CALCIUM ION (CAae)
1af: CALCIUM ION (CAaf)
1ag: CALCIUM ION (CAag)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
1q: CALCIUM ION (CAq)
1r: CALCIUM ION (CAr)
1s: CALCIUM ION (CAs)
1t: CALCIUM ION (CAt)
1u: CALCIUM ION (CAu)
1v: CALCIUM ION (CAv)
1w: CALCIUM ION (CAw)
1x: CALCIUM ION (CAx)
1y: CALCIUM ION (CAy)
1z: CALCIUM ION (CAz)
2a: LAURYL DIMETHYLAMINE-N-OXIDE (LDAa)
2aa: LAURYL DIMETHYLAMINE-N-OXIDE (LDAaa)
2ab: LAURYL DIMETHYLAMINE-N-OXIDE (LDAab)
2ac: LAURYL DIMETHYLAMINE-N-OXIDE (LDAac)
2ad: LAURYL DIMETHYLAMINE-N-OXIDE (LDAad)
2ae: LAURYL DIMETHYLAMINE-N-OXIDE (LDAae)
2af: LAURYL DIMETHYLAMINE-N-OXIDE (LDAaf)
2ag: LAURYL DIMETHYLAMINE-N-OXIDE (LDAag)
2ah: LAURYL DIMETHYLAMINE-N-OXIDE (LDAah)
2ai: LAURYL DIMETHYLAMINE-N-OXIDE (LDAai)
2aj: LAURYL DIMETHYLAMINE-N-OXIDE (LDAaj)
2ak: LAURYL DIMETHYLAMINE-N-OXIDE (LDAak)
2al: LAURYL DIMETHYLAMINE-N-OXIDE (LDAal)
2am: LAURYL DIMETHYLAMINE-N-OXIDE (LDAam)
2an: LAURYL DIMETHYLAMINE-N-OXIDE (LDAan)
2ao: LAURYL DIMETHYLAMINE-N-OXIDE (LDAao)
2ap: LAURYL DIMETHYLAMINE-N-OXIDE (LDAap)
2aq: LAURYL DIMETHYLAMINE-N-OXIDE (LDAaq)
2ar: LAURYL DIMETHYLAMINE-N-OXIDE (LDAar)
2as: LAURYL DIMETHYLAMINE-N-OXIDE (LDAas)
2at: LAURYL DIMETHYLAMINE-N-OXIDE (LDAat)
2au: LAURYL DIMETHYLAMINE-N-OXIDE (LDAau)
2av: LAURYL DIMETHYLAMINE-N-OXIDE (LDAav)
2aw: LAURYL DIMETHYLAMINE-N-OXIDE (LDAaw)
2ax: LAURYL DIMETHYLAMINE-N-OXIDE (LDAax)
2ay: LAURYL DIMETHYLAMINE-N-OXIDE (LDAay)
2az: LAURYL DIMETHYLAMINE-N-OXIDE (LDAaz)
2b: LAURYL DIMETHYLAMINE-N-OXIDE (LDAb)
2ba: LAURYL DIMETHYLAMINE-N-OXIDE (LDAba)
2bb: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbb)
2bc: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbc)
2bd: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbd)
2be: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbe)
2bf: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbf)
2bg: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbg)
2bh: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbh)
2bi: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbi)
2bj: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbj)
2bk: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbk)
2bl: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbl)
2bm: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbm)
2bn: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbn)
2bo: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbo)
2bp: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbp)
2bq: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbq)
2br: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbr)
2bs: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbs)
2bt: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbt)
2bu: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbu)
2bv: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbv)
2bw: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbw)
2bx: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbx)
2by: LAURYL DIMETHYLAMINE-N-OXIDE (LDAby)
2bz: LAURYL DIMETHYLAMINE-N-OXIDE (LDAbz)
2c: LAURYL DIMETHYLAMINE-N-OXIDE (LDAc)
2ca: LAURYL DIMETHYLAMINE-N-OXIDE (LDAca)
2cb: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcb)
2cc: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcc)
2cd: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcd)
2ce: LAURYL DIMETHYLAMINE-N-OXIDE (LDAce)
2cf: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcf)
2cg: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcg)
2ch: LAURYL DIMETHYLAMINE-N-OXIDE (LDAch)
2ci: LAURYL DIMETHYLAMINE-N-OXIDE (LDAci)
2cj: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcj)
2ck: LAURYL DIMETHYLAMINE-N-OXIDE (LDAck)
2cl: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcl)
2cm: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcm)
2cn: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcn)
2co: LAURYL DIMETHYLAMINE-N-OXIDE (LDAco)
2cp: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcp)
2cq: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcq)
2cr: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcr)
2cs: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcs)
2ct: LAURYL DIMETHYLAMINE-N-OXIDE (LDAct)
2cu: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcu)
2cv: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcv)
2cw: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcw)
2cx: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcx)
2cy: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcy)
2cz: LAURYL DIMETHYLAMINE-N-OXIDE (LDAcz)
2d: LAURYL DIMETHYLAMINE-N-OXIDE (LDAd)
2da: LAURYL DIMETHYLAMINE-N-OXIDE (LDAda)
2db: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdb)
2dc: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdc)
2dd: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdd)
2de: LAURYL DIMETHYLAMINE-N-OXIDE (LDAde)
2df: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdf)
2dg: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdg)
2dh: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdh)
2di: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdi)
2dj: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdj)
2dk: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdk)
2dl: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdl)
2dm: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdm)
2dn: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdn)
2do: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdo)
2dp: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdp)
2dq: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdq)
2dr: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdr)
2ds: LAURYL DIMETHYLAMINE-N-OXIDE (LDAds)
2dt: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdt)
2du: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdu)
2dv: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdv)
2dw: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdw)
2dx: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdx)
2dy: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdy)
2dz: LAURYL DIMETHYLAMINE-N-OXIDE (LDAdz)
2e: LAURYL DIMETHYLAMINE-N-OXIDE (LDAe)
2ea: LAURYL DIMETHYLAMINE-N-OXIDE (LDAea)
2eb: LAURYL DIMETHYLAMINE-N-OXIDE (LDAeb)
2ec: LAURYL DIMETHYLAMINE-N-OXIDE (LDAec)
2ed: LAURYL DIMETHYLAMINE-N-OXIDE (LDAed)
2ee: LAURYL DIMETHYLAMINE-N-OXIDE (LDAee)
2ef: LAURYL DIMETHYLAMINE-N-OXIDE (LDAef)
2eg: LAURYL DIMETHYLAMINE-N-OXIDE (LDAeg)
2eh: LAURYL DIMETHYLAMINE-N-OXIDE (LDAeh)
2ei: LAURYL DIMETHYLAMINE-N-OXIDE (LDAei)
2ej: LAURYL DIMETHYLAMINE-N-OXIDE (LDAej)
2ek: LAURYL DIMETHYLAMINE-N-OXIDE (LDAek)
2el: LAURYL DIMETHYLAMINE-N-OXIDE (LDAel)
2em: LAURYL DIMETHYLAMINE-N-OXIDE (LDAem)
2en: LAURYL DIMETHYLAMINE-N-OXIDE (LDAen)
2eo: LAURYL DIMETHYLAMINE-N-OXIDE (LDAeo)
2ep: LAURYL DIMETHYLAMINE-N-OXIDE (LDAep)
2eq: LAURYL DIMETHYLAMINE-N-OXIDE (LDAeq)
2er: LAURYL DIMETHYLAMINE-N-OXIDE (LDAer)
2es: LAURYL DIMETHYLAMINE-N-OXIDE (LDAes)
2et: LAURYL DIMETHYLAMINE-N-OXIDE (LDAet)
2eu: LAURYL DIMETHYLAMINE-N-OXIDE (LDAeu)
2ev: LAURYL DIMETHYLAMINE-N-OXIDE (LDAev)
2f: LAURYL DIMETHYLAMINE-N-OXIDE (LDAf)
2g: LAURYL DIMETHYLAMINE-N-OXIDE (LDAg)
2h: LAURYL DIMETHYLAMINE-N-OXIDE (LDAh)
2i: LAURYL DIMETHYLAMINE-N-OXIDE (LDAi)
2j: LAURYL DIMETHYLAMINE-N-OXIDE (LDAj)
2k: LAURYL DIMETHYLAMINE-N-OXIDE (LDAk)
2l: LAURYL DIMETHYLAMINE-N-OXIDE (LDAl)
2m: LAURYL DIMETHYLAMINE-N-OXIDE (LDAm)
2n: LAURYL DIMETHYLAMINE-N-OXIDE (LDAn)
2o: LAURYL DIMETHYLAMINE-N-OXIDE (LDAo)
2p: LAURYL DIMETHYLAMINE-N-OXIDE (LDAp)
2q: LAURYL DIMETHYLAMINE-N-OXIDE (LDAq)
2r: LAURYL DIMETHYLAMINE-N-OXIDE (LDAr)
2s: LAURYL DIMETHYLAMINE-N-OXIDE (LDAs)
2t: LAURYL DIMETHYLAMINE-N-OXIDE (LDAt)
2u: LAURYL DIMETHYLAMINE-N-OXIDE (LDAu)
2v: LAURYL DIMETHYLAMINE-N-OXIDE (LDAv)
2w: LAURYL DIMETHYLAMINE-N-OXIDE (LDAw)
2x: LAURYL DIMETHYLAMINE-N-OXIDE (LDAx)
2y: LAURYL DIMETHYLAMINE-N-OXIDE (LDAy)
2z: LAURYL DIMETHYLAMINE-N-OXIDE (LDAz)
3a: TRIS(HYDROXYETHYL)AMINOMETHANE (TAMa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
LDA
26
Ligand/Ion
LAURYL DIMETHYLAMINE-N-OXIDE
3
TAM
-1
Ligand/Ion
TRIS(HYDROXYETHYL)AMINOMETHANE
[
close Hetero Component info
]
Sites
(50, 50)
Info
All Sites
01: BC6 (SOFTWARE)
02: BC9 (SOFTWARE)
03: CC6 (SOFTWARE)
04: CC8 (SOFTWARE)
05: CC9 (SOFTWARE)
06: DC1 (SOFTWARE)
07: DC2 (SOFTWARE)
08: DC3 (SOFTWARE)
09: DC4 (SOFTWARE)
10: DC5 (SOFTWARE)
11: DC7 (SOFTWARE)
12: EC9 (SOFTWARE)
13: FC4 (SOFTWARE)
14: FC5 (SOFTWARE)
15: FC6 (SOFTWARE)
16: FC7 (SOFTWARE)
17: FC9 (SOFTWARE)
18: GC5 (SOFTWARE)
19: GC8 (SOFTWARE)
20: GC9 (SOFTWARE)
21: HC1 (SOFTWARE)
22: HC2 (SOFTWARE)
23: HC7 (SOFTWARE)
24: HC8 (SOFTWARE)
25: RC1 (SOFTWARE)
26: RC6 (SOFTWARE)
27: RC7 (SOFTWARE)
28: RC8 (SOFTWARE)
29: RC9 (SOFTWARE)
30: SC1 (SOFTWARE)
31: SC2 (SOFTWARE)
32: SC3 (SOFTWARE)
33: SC4 (SOFTWARE)
34: SC5 (SOFTWARE)
35: SC6 (SOFTWARE)
36: SC7 (SOFTWARE)
37: SC8 (SOFTWARE)
38: SC9 (SOFTWARE)
39: TC1 (SOFTWARE)
40: TC2 (SOFTWARE)
41: TC3 (SOFTWARE)
42: TC4 (SOFTWARE)
43: TC5 (SOFTWARE)
44: TC6 (SOFTWARE)
45: TC7 (SOFTWARE)
46: TC8 (SOFTWARE)
47: TC9 (SOFTWARE)
48: UC1 (SOFTWARE)
49: UC2 (SOFTWARE)
50: UC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC6
SOFTWARE
TYR B:22 , ASP B:27 , ASP B:56 , SER B:58 , HOH B:2023 , HOH D:2071
BINDING SITE FOR RESIDUE CA B1286
02
BC9
SOFTWARE
ASP C:224 , ASP D:243
BINDING SITE FOR RESIDUE CA C 313
03
CC6
SOFTWARE
ASP C:243 , ASP D:224 , HOH D:2092
BINDING SITE FOR RESIDUE CA C1287
04
CC8
SOFTWARE
ASN D:18 , VAL D:19 , GLY D:21 , ASP D:25 , MET D:26 , HOH D:2005 , HOH D:2009
BINDING SITE FOR RESIDUE CA D1283
05
CC9
SOFTWARE
VAL D:19 , GLU D:20 , GLY D:21 , GLY D:23 , HOH D:2009
BINDING SITE FOR RESIDUE CA D1284
06
DC1
SOFTWARE
ASN D:219 , ASP D:221 , ASP D:225 , GLU D:227 , GLU D:229
BINDING SITE FOR RESIDUE CA D1285
07
DC2
SOFTWARE
ASP D:225 , GLU D:229 , GLU D:263 , HOH D:2090 , HOH D:2107
BINDING SITE FOR RESIDUE CA D1286
08
DC3
SOFTWARE
HIS D:261 , HOH D:2105
BINDING SITE FOR RESIDUE CA D1287
09
DC4
SOFTWARE
GLU D:70 , GLU D:72 , LYS D:113 , HOH D:2029 , HOH D:2045
BINDING SITE FOR RESIDUE CA D1288
10
DC5
SOFTWARE
GLU D:263 , HOH D:2106
BINDING SITE FOR RESIDUE CA D1289
11
DC7
SOFTWARE
LDA D:1309
BINDING SITE FOR RESIDUE LDA A1028
12
EC9
SOFTWARE
PHE A:128 , THR A:155 , TYR A:171 , LEU A:173 , GLN A:191 , LDA A:1309 , LYS D:121
BINDING SITE FOR RESIDUE LDA A1299
13
FC4
SOFTWARE
TYR A:242 , GLN A:245 , LDA A:1313 , HOH A:2091 , TYR D:14 , GLY D:273 , VAL D:274
BINDING SITE FOR RESIDUE LDA A1303
14
FC5
SOFTWARE
PHE A:244 , LDA A:1313 , TYR D:14 , VAL D:274 , LDA D:1310
BINDING SITE FOR RESIDUE LDA A1304
15
FC6
SOFTWARE
LEU A:201 , HIS A:204 , TYR A:240 , LDA D:1293
BINDING SITE FOR RESIDUE LDA A1305
16
FC7
SOFTWARE
LEU A:122 , LDA A:413 , LDA D:1307
BINDING SITE FOR RESIDUE LDA A1306
17
FC9
SOFTWARE
LYS A:136 , MET A:179 , PHE D:77 , LDA D:1311
BINDING SITE FOR RESIDUE LDA A1308
18
GC5
SOFTWARE
TYR A:242 , LEU A:252 , LDA A:1303 , LDA A:1304 , LDA A:1320 , HOH A:2091 , LDA D:1293
BINDING SITE FOR RESIDUE LDA A1313
19
GC8
SOFTWARE
HOH A:2109 , LDA D:1298
BINDING SITE FOR RESIDUE LDA A1316
20
GC9
SOFTWARE
ASP A:27 , TYR A:57 , LDA A:1292 , LDA A:1319 , LDA A:1320 , TYR D:242
BINDING SITE FOR RESIDUE LDA A1318
21
HC1
SOFTWARE
GLY A:273 , VAL A:274 , LDA A:1291 , LDA A:1318 , LDA A:1320 , HOH A:2110 , TYR D:242 , PHE D:244 , GLN D:245 , HOH D:2100
BINDING SITE FOR RESIDUE LDA A1319
22
HC2
SOFTWARE
TYR A:14 , TYR A:57 , VAL A:274 , LDA A:1313 , LDA A:1318 , LDA A:1319 , HOH A:2110 , PHE D:244 , ASN D:246 , VAL D:250
BINDING SITE FOR RESIDUE LDA A1320
23
HC7
SOFTWARE
LDA A:413 , LDA A:1326 , LDA D:1308
BINDING SITE FOR RESIDUE LDA A1325
24
HC8
SOFTWARE
LDA A:1324 , LDA A:1325 , LEU D:122
BINDING SITE FOR RESIDUE LDA A1326
25
RC1
SOFTWARE
ASN C:246 , LDA C:1312 , GLU D:227
BINDING SITE FOR RESIDUE LDA C1324
26
RC6
SOFTWARE
ASN D:80 , ASP D:82 , PHE D:83 , LDA D:1282
BINDING SITE FOR RESIDUE LDA D1281
27
RC7
SOFTWARE
TRP A:118 , PHE A:128 , TRP D:118 , VAL D:120 , PHE D:128 , LDA D:1281 , LDA D:1305
BINDING SITE FOR RESIDUE LDA D1282
28
RC8
SOFTWARE
ARG D:44 , ASP D:117 , HOH D:2111
BINDING SITE FOR RESIDUE LDA D1290
29
RC9
SOFTWARE
GLU D:15 , ARG D:168 , THR D:207 , ARG D:211 , ARG D:235 , GLU D:253 , TYR D:271 , HOH D:2004
BINDING SITE FOR RESIDUE LDA D1291
30
SC1
SOFTWARE
TYR D:254 , PHE D:256 , LDA D:1293
BINDING SITE FOR RESIDUE LDA D1292
31
SC2
SOFTWARE
LDA A:1305 , LDA A:1313 , HIS D:270 , LDA D:1292
BINDING SITE FOR RESIDUE LDA D1293
32
SC3
SOFTWARE
ILE D:193 , GLY D:213 , ASP D:232 , LDA D:1301
BINDING SITE FOR RESIDUE LDA D1294
33
SC4
SOFTWARE
THR D:144 , GLY D:145 , ARG D:150 , GLU D:174 , TRP D:220 , HOH D:2039 , HOH D:2112
BINDING SITE FOR RESIDUE LDA D1295
34
SC5
SOFTWARE
TRP D:6
BINDING SITE FOR RESIDUE LDA D1296
35
SC6
SOFTWARE
ASN D:40 , TRP D:43
BINDING SITE FOR RESIDUE LDA D1297
36
SC7
SOFTWARE
LDA A:1316 , VAL D:73 , TYR D:75 , LEU D:87 , GLY D:89
BINDING SITE FOR RESIDUE LDA D1298
37
SC8
SOFTWARE
TYR D:14 , PRO D:32 , SER D:33 , VAL D:34 , TYR D:49 , GLN D:51 , VAL D:276 , LDA D:1310
BINDING SITE FOR RESIDUE LDA D1299
38
SC9
SOFTWARE
LYS A:121 , PHE D:128 , THR D:155 , TYR D:171 , LEU D:173 , GLN D:191 , LDA D:1307
BINDING SITE FOR RESIDUE LDA D1300
39
TC1
SOFTWARE
LEU D:214 , LDA D:1294 , LDA D:1307 , LDA D:1308
BINDING SITE FOR RESIDUE LDA D1301
40
TC2
SOFTWARE
LEU D:71 , VAL D:73 , GLN D:110
BINDING SITE FOR RESIDUE LDA D1303
41
TC3
SOFTWARE
LEU D:157 , TYR D:159 , LDA D:1308
BINDING SITE FOR RESIDUE LDA D1304
42
TC4
SOFTWARE
ASN A:80 , ASP A:82 , PHE A:83 , LDA D:1282 , HOH D:2113
BINDING SITE FOR RESIDUE LDA D1305
43
TC5
SOFTWARE
PHE A:77 , MET D:134 , LYS D:136 , MET D:179
BINDING SITE FOR RESIDUE LDA D1306
44
TC6
SOFTWARE
LDA A:1306 , VAL D:169 , TYR D:171 , GLN D:191 , LDA D:1300 , LDA D:1301
BINDING SITE FOR RESIDUE LDA D1307
45
TC7
SOFTWARE
LDA A:1325 , LEU D:126 , TYR D:159 , LDA D:1301 , LDA D:1304
BINDING SITE FOR RESIDUE LDA D1308
46
TC8
SOFTWARE
LDA A:1028 , GLY D:11 , ASN D:246 , TYR D:278
BINDING SITE FOR RESIDUE LDA D1309
47
TC9
SOFTWARE
LDA A:1304 , LDA D:1299
BINDING SITE FOR RESIDUE LDA D1310
48
UC1
SOFTWARE
LDA A:1308 , GLY D:41 , PRO D:42 , TYR D:75 , GLN D:76 , PHE D:77 , HOH D:2032
BINDING SITE FOR RESIDUE LDA D1311
49
UC2
SOFTWARE
PHE D:8 , PHE D:36 , PHE D:280
BINDING SITE FOR RESIDUE LDA D1312
50
UC3
SOFTWARE
ASN B:178 , MET B:179 , ASP B:181 , GLU B:187 , GLY D:21 , TYR D:22 , GLY D:23 , ASP D:27 , ASP D:56 , SER D:58
BINDING SITE FOR RESIDUE LDA D1313
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SAPs(SNPs)/Variants
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
(1, 4)
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all CATH domains
1a: CATH_2iwvA00 (A:4-280)
1b: CATH_2iwvB00 (B:4-280)
1c: CATH_2iwvC00 (C:4-280)
1d: CATH_2iwvD00 (D:4-280)
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Porin
(92)
Homologous Superfamily
:
monomeric porin ompg
(3)
Escherichia coli. Organism_taxid: 83333. Strain: k12.
(2)
1a
2iwvA00
A:4-280
1b
2iwvB00
B:4-280
1c
2iwvC00
C:4-280
1d
2iwvD00
D:4-280
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Pfam Domains
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Chain D
Asymmetric Unit 1
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Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (521 KB)
Header - Asym.Unit
Biol.Unit 1 (130 KB)
Header - Biol.Unit 1
Biol.Unit 2 (134 KB)
Header - Biol.Unit 2
Biol.Unit 3 (132 KB)
Header - Biol.Unit 3
Biol.Unit 4 (122 KB)
Header - Biol.Unit 4
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