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Getting 'Biological Unit' information from database.
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2IWG
Asym. Unit
Info
Asym.Unit (142 KB)
Biol.Unit 1 (133 KB)
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(1)
Title
:
COMPLEX BETWEEN THE PRYSPRY DOMAIN OF TRIM21 AND IGG FC
Authors
:
L. C. James, A. H. Keeble, D. A. Rhodes, J. Trowsdale
Date
:
30 Jun 06 (Deposition) - 27 Mar 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,B,D,E (1x)
Keywords
:
Zinc, Rna-Binding, Zinc-Finger, Dna-Binding, Ribonucleoprotein, Immunoglobulin Domain, Immunoglobulin C Region, Systemic Lupus Erythematosus, Polymorphism, Glycoprotein, Metal-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. C. James, A. H. Keeble, Z. Khan, D. A. Rhodes, J. Trowsdale
Structural Basis For Pryspry-Mediated Tripartite Motif (Trim) Protein Function.
Proc. Natl. Acad. Sci. Usa V. 104 6200 2007
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: 2,6-ANHYDRO-1-DEOXY-D-GALACTITOL (FU4a)
1b: 2,6-ANHYDRO-1-DEOXY-D-GALACTITOL (FU4b)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FU4
2
Ligand/Ion
2,6-ANHYDRO-1-DEOXY-D-GALACTITOL
2
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
3
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:265 , ASN A:297 , NAG A:1445 , FU4 A:1451
BINDING SITE FOR RESIDUE NAG A1444
02
AC2
SOFTWARE
PHE A:241 , NAG A:1444 , MAN A:1446 , MAN A:1447 , FU4 A:1451
BINDING SITE FOR RESIDUE NAG A1445
03
AC3
SOFTWARE
PHE A:241 , NAG A:1445 , MAN A:1447 , MAN A:1449 , HOH A:2045
BINDING SITE FOR RESIDUE MAN A1446
04
AC4
SOFTWARE
NAG A:1445 , MAN A:1446 , NAG A:1448 , FU4 A:1451 , HOH A:2047
BINDING SITE FOR RESIDUE MAN A1447
05
AC5
SOFTWARE
PHE A:243 , MAN A:1447 , GAL A:1450
BINDING SITE FOR RESIDUE NAG A1448
06
AC6
SOFTWARE
MAN A:1446
BINDING SITE FOR RESIDUE MAN A1449
07
AC7
SOFTWARE
PRO A:244 , PRO A:245 , GLU A:258 , THR A:260 , NAG A:1448
BINDING SITE FOR RESIDUE GAL A1450
08
AC8
SOFTWARE
NAG A:1444 , NAG A:1445 , MAN A:1447 , HOH A:2048
BINDING SITE FOR RESIDUE FU4 A1451
09
AC9
SOFTWARE
ASP D:265 , ASN D:297 , NAG D:1445 , FU4 D:1451
BINDING SITE FOR RESIDUE NAG D1444
10
BC1
SOFTWARE
PHE D:241 , NAG D:1444 , MAN D:1446 , MAN D:1447 , FU4 D:1451
BINDING SITE FOR RESIDUE NAG D1445
11
BC2
SOFTWARE
PHE D:241 , NAG D:1445 , MAN D:1447 , MAN D:1449
BINDING SITE FOR RESIDUE MAN D1446
12
BC3
SOFTWARE
NAG D:1445 , MAN D:1446 , NAG D:1448 , FU4 D:1451
BINDING SITE FOR RESIDUE MAN D1447
13
BC4
SOFTWARE
MAN D:1447 , GAL D:1450
BINDING SITE FOR RESIDUE NAG D1448
14
BC5
SOFTWARE
MAN D:1446
BINDING SITE FOR RESIDUE MAN D1449
15
BC6
SOFTWARE
PRO D:244 , GLU D:258 , THR D:260 , NAG D:1448
BINDING SITE FOR RESIDUE GAL D1450
16
BC7
SOFTWARE
NAG D:1444 , NAG D:1445 , MAN D:1447 , HOH D:2042
BINDING SITE FOR RESIDUE FU4 D1451
[
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_003887 (D356E, chain A/D, )
2: VAR_003888 (L358M, chain A/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_003887
D
239
E
IGHG1_HUMAN
Unclassified
---
A/D
D
356
E
2
UniProt
VAR_003888
L
241
M
IGHG1_HUMAN
Unclassified
---
A/D
L
358
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (-|A:423-429,D:423-429)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGHG1_HUMAN
81-87
306-312
2
-
A:423-429
D:423-429
[
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Exons
(4, 8)
Info
All Exons
Exon 1.6a (B:2-4 | E:2-4)
Exon 1.7b (B:4-182 | E:4-182)
Exon 2.3b (A:237-341 | D:237-341)
Exon 2.4c (A:341-443 | D:341-443)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.5/1.6a
2: Boundary 1.6a/1.7b
3: Boundary 1.7b/-
4: Boundary 2.2/2.3b
5: Boundary 2.3b/2.4c
6: Boundary 2.4c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000254436
1
ENSE00001120468
chr11:
4414926-4414863
64
RO52_HUMAN
-
0
0
-
-
1.2
ENST00000254436
2
ENSE00000903567
chr11:
4411688-4411232
457
RO52_HUMAN
1-136
136
0
-
-
1.3
ENST00000254436
3
ENSE00000903568
chr11:
4410979-4410884
96
RO52_HUMAN
137-168
32
0
-
-
1.4
ENST00000254436
4
ENSE00000903569
chr11:
4409760-4409530
231
RO52_HUMAN
169-245
77
0
-
-
1.5
ENST00000254436
5
ENSE00001700049
chr11:
4408220-4408198
23
RO52_HUMAN
246-253
8
0
-
-
1.6a
ENST00000254436
6a
ENSE00000903570
chr11:
4407487-4407387
101
RO52_HUMAN
253-287
35
2
B:2-4
E:2-4
3
3
1.7b
ENST00000254436
7b
ENSE00001120479
chr11:
4407083-4406132
952
RO52_HUMAN
287-475
189
2
B:4-182
E:4-182
179
179
2.1
ENST00000390549
1
ENSE00001838294
chr14:
106209408-106209114
295
IGHG1_HUMAN
1-99
99
0
-
-
2.2
ENST00000390549
2
ENSE00001719055
chr14:
106208722-106208678
45
IGHG1_HUMAN
99-114
16
0
-
-
2.3b
ENST00000390549
3b
ENSE00001776617
chr14:
106208559-106208230
330
IGHG1_HUMAN
114-224
111
2
A:237-341
D:237-341
105
105
2.4c
ENST00000390549
4c
ENSE00001837466
chr14:
106208132-106207675
458
IGHG1_HUMAN
224-330
107
2
A:341-443
D:341-443
103
103
[
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]
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2iwgb1 (B:4-182)
1b: SCOP_d2iwge_ (E:)
2a: SCOP_d2iwga1 (A:237-341)
2b: SCOP_d2iwgd1 (D:237-341)
3a: SCOP_d2iwga2 (A:342-443)
3b: SCOP_d2iwgd2 (D:342-443)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
SPRY domain
(9)
Protein domain
:
52 kDa Ro protein
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2iwgb1
B:4-182
1b
d2iwge_
E:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
(36)
Human (Homo sapiens) [TaxId: 9606]
(31)
2a
d2iwga1
A:237-341
2b
d2iwgd1
D:237-341
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
(38)
Human (Homo sapiens) [TaxId: 9606]
(31)
3a
d2iwga2
A:342-443
3b
d2iwgd2
D:342-443
[
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]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2iwgA02 (A:338-443)
1b: CATH_2iwgD02 (D:338-443)
1c: CATH_2iwgA01 (A:238-337)
1d: CATH_2iwgD01 (D:238-337)
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(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
2iwgA02
A:338-443
1b
2iwgD02
D:338-443
1c
2iwgA01
A:238-337
1d
2iwgD01
D:238-337
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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Protein
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Sidechain
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain D
Chain E
Asymmetric Unit 1
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Asym.Unit (142 KB)
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