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2IVZ
Biol. Unit 2
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Asym.Unit (281 KB)
Biol.Unit 1 (73 KB)
Biol.Unit 2 (74 KB)
Biol.Unit 3 (73 KB)
Biol.Unit 4 (72 KB)
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(1)
Title
:
STRUCTURE OF TOLB IN COMPLEX WITH A PEPTIDE OF THE COLICIN E9 T-DOMAIN
Authors
:
S. R. Loftus, D. Walker, M. J. Mate, D. A. Bonsor, R. James, G. R. Moore, C. Kleanthous
Date
:
23 Jun 06 (Deposition) - 16 Aug 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,G (1x)
Biol. Unit 4: D,H (1x)
Keywords
:
Protein Transport/Hydrolase, Protein-Protein Interaction, Protein Transport, Bacteriocin Transport, Tolb, Colicin, Plasmid, Nuclease, Hydrolase, Transport, Antibiotic, Periplasmic, Bacteriocin, Natively Disordered Proteins, Protein Transport/Hydrolase Complex, Endonuclease, Antimicrobial, Translocation
(Keyword Search:
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Reference
:
S. R. Loftus, D. Walker, M. J. Mate, D. A. Bonsor, R. James, G. R. Moore, C. Kleanthous
Competitive Recruitment Of The Periplasmic Translocation Portal Tolb By A Natively Disordered Domain Of Colicin E9
Proc. Natl. Acad. Sci. Usa V. 103 12353 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
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Sites
(1, 1)
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All Sites
1: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
ASP B:337 , HOH B:2048 , HOH B:2247 , HOH B:2248 , HOH B:2249 , HOH B:2250 , HOH B:2281 , HOH B:2282
BINDING SITE FOR RESIDUE CA B1432
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2ivza1 (A:163-431)
1b: SCOP_d2ivzb1 (B:163-431)
1c: SCOP_d2ivzc1 (C:163-431)
1d: SCOP_d2ivzd1 (D:163-431)
2a: SCOP_d2ivza2 (A:35-162)
2b: SCOP_d2ivzb2 (B:35-162)
2c: SCOP_d2ivzc2 (C:35-162)
2d: SCOP_d2ivzd2 (D:35-162)
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Protein Domains
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
TolB, C-terminal domain
(7)
Family
:
TolB, C-terminal domain
(7)
Protein domain
:
TolB, C-terminal domain
(4)
Escherichia coli [TaxId: 562]
(4)
1a
d2ivza1
A:163-431
1b
d2ivzb1
B:163-431
1c
d2ivzc1
C:163-431
1d
d2ivzd1
D:163-431
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Anticodon-binding domain-like
(97)
Superfamily
:
TolB, N-terminal domain
(7)
Family
:
TolB, N-terminal domain
(4)
Protein domain
:
TolB, N-terminal domain
(4)
Escherichia coli [TaxId: 562]
(4)
2a
d2ivza2
A:35-162
2b
d2ivzb2
B:35-162
2c
d2ivzc2
C:35-162
2d
d2ivzd2
D:35-162
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2ivzD01 (D:34-165)
1b: CATH_2ivzA01 (A:35-165)
1c: CATH_2ivzB01 (B:35-165)
1d: CATH_2ivzC01 (C:35-165)
2a: CATH_2ivzA02 (A:166-431)
2b: CATH_2ivzB02 (B:166-431)
2c: CATH_2ivzC02 (C:166-431)
2d: CATH_2ivzD02 (D:166-431)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.10070, no name defined]
(6)
Escherichia coli. Organism_taxid: 562.
(4)
1a
2ivzD01
D:34-165
1b
2ivzA01
A:35-165
1c
2ivzB01
B:35-165
1d
2ivzC01
C:35-165
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
TolB, C-terminal domain
(42)
Escherichia coli. Organism_taxid: 562.
(4)
2a
2ivzA02
A:166-431
2b
2ivzB02
B:166-431
2c
2ivzC02
C:166-431
2d
2ivzD02
D:166-431
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (281 KB)
Header - Asym.Unit
Biol.Unit 1 (73 KB)
Header - Biol.Unit 1
Biol.Unit 2 (74 KB)
Header - Biol.Unit 2
Biol.Unit 3 (73 KB)
Header - Biol.Unit 3
Biol.Unit 4 (72 KB)
Header - Biol.Unit 4
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