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Asym. Unit
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Asym.Unit (105 KB)
Biol.Unit 1 (27 KB)
Biol.Unit 2 (27 KB)
Biol.Unit 3 (27 KB)
Biol.Unit 4 (27 KB)
Biol.Unit 5 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ISDA NEAT DOMAIN FROM STAPHYLOCOCCUS AUREUS WITH HEME BOUND
Authors
:
J. C. Grigg, C. L. Vermeiren, D. E. Heinrichs, M. E. Murphy
Date
:
19 Oct 06 (Deposition) - 26 Dec 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: C,D (1x)
Keywords
:
Neat Domain, Heme, Iron, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Grigg, C. L. Vermeiren, D. E. Heinrichs, M. E. Murphy
Haem Recognition By A Staphylococcus Aureus Neat Domain.
Mol. Microbiol. V. 63 139 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
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No.
Name
Count
Type
Full Name
1
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:75 , SER A:82 , HIS A:83 , TYR A:87 , TRP A:113 , ILE A:159 , VAL A:161 , ILE A:164 , TYR A:166 , TYR A:170 , THR A:172 , HOH A:206 , PRO B:162 , GLN B:163 , ASN B:165 , PRO C:162 , GLN C:163 , HOH C:314
BINDING SITE FOR RESIDUE HEM A 200
2
AC2
SOFTWARE
PRO A:162 , GLN A:163 , ASN A:165 , HOH A:274 , HOH A:288 , LYS B:75 , SER B:82 , HIS B:83 , MSE B:84 , TYR B:87 , PHE B:112 , TRP B:113 , ILE B:159 , VAL B:161 , ILE B:164 , TYR B:166 , TYR B:170 , THR B:172 , HOH B:248 , HOH B:280 , HOH B:307
BINDING SITE FOR RESIDUE HEM B 200
3
AC3
SOFTWARE
LYS C:75 , SER C:82 , HIS C:83 , MSE C:84 , TYR C:87 , PHE C:112 , TRP C:113 , ILE C:159 , ILE C:164 , TYR C:166 , TYR C:170 , THR C:172 , HOH C:225 , HOH C:249 , HOH C:282 , ASP D:86 , TYR D:87 , HEM D:200 , HOH D:237
BINDING SITE FOR RESIDUE HEM C 200
4
AC4
SOFTWARE
ASP C:86 , TYR C:87 , HEM C:200 , HOH C:230 , SER D:82 , HIS D:83 , MSE D:84 , TYR D:87 , TRP D:113 , ILE D:159 , VAL D:161 , ILE D:164 , TYR D:166 , TYR D:170 , THR D:172 , HOH D:201 , HOH D:221 , HOH D:303
BINDING SITE FOR RESIDUE HEM D 200
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: NEAT (D:62-184,D:62-184)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NEAT
PS50978
NEAT domain profile.
ISDA_STAA8
62-184
1
D:62-184
ISDA_STAAW
62-184
1
D:62-184
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2itfa_ (A:)
1b: SCOP_d2itfb_ (B:)
1c: SCOP_d2itfc_ (C:)
1d: SCOP_d2itfd_ (D:)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
NEAT domain-like
(27)
Family
:
NEAT domain
(14)
Protein domain
:
Iron-regulated surface determinant protein A, IsdA
(3)
Staphylococcus aureus [TaxId: 1280]
(3)
1a
d2itfa_
A:
1b
d2itfb_
B:
1c
d2itfc_
C:
1d
d2itfd_
D:
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CATH Domains
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Pfam Domains
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Asym.Unit (105 KB)
Header - Asym.Unit
Biol.Unit 1 (27 KB)
Header - Biol.Unit 1
Biol.Unit 2 (27 KB)
Header - Biol.Unit 2
Biol.Unit 3 (27 KB)
Header - Biol.Unit 3
Biol.Unit 4 (27 KB)
Header - Biol.Unit 4
Biol.Unit 5 (50 KB)
Header - Biol.Unit 5
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