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2ISS
Biol. Unit 1
Info
Asym.Unit (226 KB)
Biol.Unit 1 (865 KB)
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(1)
Title
:
STRUCTURE OF THE PLP SYNTHASE HOLOENZYME FROM THERMOTOGA MARITIMA
Authors
:
F. Zein, Y. Zhang, Y. N. Kang, K. Burns, T. P. Begley, S. E. Ealick
Date
:
18 Oct 06 (Deposition) - 02 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (4x)
Keywords
:
(Beta/Alpha)8-Barrel, Alpha/Beta Three Layer Sandwich, Lyase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Zein, Y. Zhang, Y. N. Kang, K. Burns, T. P. Begley, S. E. Ealick
Structural Insights Into The Mechanism Of The Plp Synthase Holoenzyme From Thermotoga Maritima
Biochemistry V. 45 14609 2006
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: RIBULOSE-5-PHOSPHATE (5RPa)
1b: RIBULOSE-5-PHOSPHATE (5RPb)
1c: RIBULOSE-5-PHOSPHATE (5RPc)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
5RP
12
Ligand/Ion
RIBULOSE-5-PHOSPHATE
2
PO4
12
Ligand/Ion
PHOSPHATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:25 , MET A:44 , PRO A:50 , LYS A:82 , ASP A:103 , VAL A:107 , ARG A:148 , GLU A:152 , ALA A:153 , GLY A:154 , GLY A:214 , GLY A:215 , GLY A:236 , SER A:237
BINDING SITE FOR RESIDUE 5RP A 294
2
AC2
SOFTWARE
ASP B:25 , MET B:44 , PRO B:50 , LYS B:82 , ASP B:103 , VAL B:107 , ARG B:148 , GLU B:152 , ALA B:153 , GLY B:154 , GLY B:214 , GLY B:215 , GLY B:236 , SER B:237
BINDING SITE FOR RESIDUE 5RP B 294
3
AC3
SOFTWARE
ASP C:25 , MET C:44 , PRO C:50 , LYS C:82 , ASP C:103 , VAL C:107 , ARG C:148 , GLU C:152 , ALA C:153 , GLY C:154 , GLY C:214 , GLY C:215 , GLY C:236 , SER C:237
BINDING SITE FOR RESIDUE 5RP C 294
4
AC4
SOFTWARE
HIS A:116 , ARG A:138 , ARG A:139 , LYS A:188
BINDING SITE FOR RESIDUE PO4 A 300
5
AC5
SOFTWARE
HIS B:116 , ARG B:138 , ARG B:139 , LYS C:188
BINDING SITE FOR RESIDUE PO4 B 301
6
AC6
SOFTWARE
LYS B:188 , HIS C:116 , ARG C:138 , ARG C:139
BINDING SITE FOR RESIDUE PO4 C 302
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 48)
Info
All PROSITE Patterns/Profiles
1: PDXT_SNO_2 (D:2-187,E:2-187,F:2-187)
2: PDXS_SNZ_2 (A:10-280,B:10-280,C:10-280)
3: PDXT_SNO_1 (D:40-50,E:40-50,F:40-50)
4: PDXS_SNZ_1 (A:206-224,B:206-224,C:206-224)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDXT_SNO_2
PS51130
PdxT/SNO family profile.
PDXT_THEMA
2-188
12
D:2-187
E:2-187
F:2-187
2
PDXS_SNZ_2
PS51129
PdxS/SNZ family profile.
PDXS_THEMA
10-293
12
A:10-280
B:10-280
C:10-280
3
PDXT_SNO_1
PS01236
PdxT/SNO family family signature.
PDXT_THEMA
40-50
12
D:40-50
E:40-50
F:40-50
4
PDXS_SNZ_1
PS01235
PdxS/SNZ family signature.
PDXS_THEMA
206-224
12
A:206-224
B:206-224
C:206-224
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2issd_ (D:)
1b: SCOP_d2isse_ (E:)
1c: SCOP_d2issf_ (F:)
2a: SCOP_d2issa_ (A:)
2b: SCOP_d2issb_ (B:)
2c: SCOP_d2issc_ (C:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Class I glutamine amidotransferase-like
(173)
Family
:
Class I glutamine amidotransferases (GAT)
(48)
Protein domain
:
Hypothetical protein YaaE
(5)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d2issd_
D:
1b
d2isse_
E:
1c
d2issf_
F:
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Ribulose-phoshate binding barrel
(356)
Family
:
PdxS-like
(6)
Protein domain
:
automated matches
(5)
Thermotoga maritima [TaxId: 2336]
(1)
2a
d2issa_
A:
2b
d2issb_
B:
2c
d2issc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2issD00 (D:0-187)
1b: CATH_2issE00 (E:1-187)
1c: CATH_2issF00 (F:1-187)
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Organisms
(
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.880, no name defined]
(97)
Thermotoga maritima. Organism_taxid: 2336. Strain: dsm3109.
(1)
1a
2issD00
D:0-187
1b
2issE00
E:1-187
1c
2issF00
F:1-187
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Asym.Unit (226 KB)
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