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2ISS
Asym. Unit
Info
Asym.Unit (226 KB)
Biol.Unit 1 (865 KB)
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(1)
Title
:
STRUCTURE OF THE PLP SYNTHASE HOLOENZYME FROM THERMOTOGA MARITIMA
Authors
:
F. Zein, Y. Zhang, Y. N. Kang, K. Burns, T. P. Begley, S. E. Ealick
Date
:
18 Oct 06 (Deposition) - 02 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (4x)
Keywords
:
(Beta/Alpha)8-Barrel, Alpha/Beta Three Layer Sandwich, Lyase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Zein, Y. Zhang, Y. N. Kang, K. Burns, T. P. Begley, S. E. Ealick
Structural Insights Into The Mechanism Of The Plp Synthase Holoenzyme From Thermotoga Maritima
Biochemistry V. 45 14609 2006
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: RIBULOSE-5-PHOSPHATE (5RPa)
1b: RIBULOSE-5-PHOSPHATE (5RPb)
1c: RIBULOSE-5-PHOSPHATE (5RPc)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5RP
3
Ligand/Ion
RIBULOSE-5-PHOSPHATE
2
PO4
3
Ligand/Ion
PHOSPHATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:25 , MET A:44 , PRO A:50 , LYS A:82 , ASP A:103 , VAL A:107 , ARG A:148 , GLU A:152 , ALA A:153 , GLY A:154 , GLY A:214 , GLY A:215 , GLY A:236 , SER A:237
BINDING SITE FOR RESIDUE 5RP A 294
2
AC2
SOFTWARE
ASP B:25 , MET B:44 , PRO B:50 , LYS B:82 , ASP B:103 , VAL B:107 , ARG B:148 , GLU B:152 , ALA B:153 , GLY B:154 , GLY B:214 , GLY B:215 , GLY B:236 , SER B:237
BINDING SITE FOR RESIDUE 5RP B 294
3
AC3
SOFTWARE
ASP C:25 , MET C:44 , PRO C:50 , LYS C:82 , ASP C:103 , VAL C:107 , ARG C:148 , GLU C:152 , ALA C:153 , GLY C:154 , GLY C:214 , GLY C:215 , GLY C:236 , SER C:237
BINDING SITE FOR RESIDUE 5RP C 294
4
AC4
SOFTWARE
HIS A:116 , ARG A:138 , ARG A:139 , LYS A:188
BINDING SITE FOR RESIDUE PO4 A 300
5
AC5
SOFTWARE
HIS B:116 , ARG B:138 , ARG B:139 , LYS C:188
BINDING SITE FOR RESIDUE PO4 B 301
6
AC6
SOFTWARE
LYS B:188 , HIS C:116 , ARG C:138 , ARG C:139
BINDING SITE FOR RESIDUE PO4 C 302
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(4, 12)
Info
All PROSITE Patterns/Profiles
1: PDXT_SNO_2 (D:2-187,E:2-187,F:2-187)
2: PDXS_SNZ_2 (A:10-280,B:10-280,C:10-280)
3: PDXT_SNO_1 (D:40-50,E:40-50,F:40-50)
4: PDXS_SNZ_1 (A:206-224,B:206-224,C:206-224)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDXT_SNO_2
PS51130
PdxT/SNO family profile.
PDXT_THEMA
2-188
3
D:2-187
E:2-187
F:2-187
2
PDXS_SNZ_2
PS51129
PdxS/SNZ family profile.
PDXS_THEMA
10-293
3
A:10-280
B:10-280
C:10-280
3
PDXT_SNO_1
PS01236
PdxT/SNO family family signature.
PDXT_THEMA
40-50
3
D:40-50
E:40-50
F:40-50
4
PDXS_SNZ_1
PS01235
PdxS/SNZ family signature.
PDXS_THEMA
206-224
3
A:206-224
B:206-224
C:206-224
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2issd_ (D:)
1b: SCOP_d2isse_ (E:)
1c: SCOP_d2issf_ (F:)
2a: SCOP_d2issa_ (A:)
2b: SCOP_d2issb_ (B:)
2c: SCOP_d2issc_ (C:)
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Protein Domains
(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Class I glutamine amidotransferase-like
(173)
Family
:
Class I glutamine amidotransferases (GAT)
(48)
Protein domain
:
Hypothetical protein YaaE
(5)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d2issd_
D:
1b
d2isse_
E:
1c
d2issf_
F:
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Ribulose-phoshate binding barrel
(356)
Family
:
PdxS-like
(6)
Protein domain
:
automated matches
(5)
Thermotoga maritima [TaxId: 2336]
(1)
2a
d2issa_
A:
2b
d2issb_
B:
2c
d2issc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2issD00 (D:0-187)
1b: CATH_2issE00 (E:1-187)
1c: CATH_2issF00 (F:1-187)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.880, no name defined]
(97)
Thermotoga maritima. Organism_taxid: 2336. Strain: dsm3109.
(1)
1a
2issD00
D:0-187
1b
2issE00
E:1-187
1c
2issF00
F:1-187
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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