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2ISA
Asym. Unit
Info
Asym.Unit (725 KB)
Biol.Unit 1 (364 KB)
Biol.Unit 2 (360 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF VIBRIO SALMONICIDA CATALASE
Authors
:
E. K. Riise, M. S. Lorentzen, R. Helland, A. O. Smalas, H. K. S. Leiros, N. P. Willassen
Date
:
17 Oct 06 (Deposition) - 23 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.97
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Peroxidase, Heme, Oxidoreductase, Iron, Hydrogen Peroxide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. K. Riise, M. S. Lorentzen, R. Helland, A. O. Smalas, H. K. S. Leiros, N. P. Willassen
The First Structure Of A Cold-Active Catalase From Vibrio Salmonicida At 1. 96A Reveals Structural Aspects Of Cold Adaptation
Acta Crystallogr. , Sect. D V. 63 135 2007
[
close entry info
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Hetero Components
(4, 28)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
3f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
3g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
3h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
4a: S-DIOXYMETHIONINE (OMTa)
4b: S-DIOXYMETHIONINE (OMTb)
4c: S-DIOXYMETHIONINE (OMTc)
4d: S-DIOXYMETHIONINE (OMTd)
4e: S-DIOXYMETHIONINE (OMTe)
4f: S-DIOXYMETHIONINE (OMTf)
4g: S-DIOXYMETHIONINE (OMTg)
4h: S-DIOXYMETHIONINE (OMTh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
GOL
8
Ligand/Ion
GLYCEROL
3
HEM
8
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
OMT
8
Mod. Amino Acid
S-DIOXYMETHIONINE
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:45 , ARG D:45
BINDING SITE FOR RESIDUE CL D 5485
02
AC2
SOFTWARE
ARG B:45 , ARG C:45
BINDING SITE FOR RESIDUE CL B 6485
03
AC3
SOFTWARE
ARG E:45 , ARG H:45
BINDING SITE FOR RESIDUE CL H 7485
04
AC4
SOFTWARE
ARG F:45 , ARG G:45 , HOH H:7859
BINDING SITE FOR RESIDUE CL F 8485
05
AC5
SOFTWARE
ARG A:51 , OMT A:53 , HIS A:54 , ARG A:91 , GLY A:110 , ALA A:125 , GLY A:126 , ASN A:127 , PRO A:137 , PHE A:140 , GLY A:195 , SER A:196 , HIS A:197 , LEU A:278 , PHE A:313 , MET A:329 , ARG A:333 , TYR A:337 , GLN A:341 , ARG A:344 , HOH A:5515 , HOH A:5524 , HOH A:5526 , HOH A:5671 , LEU B:40 , ASP B:44
BINDING SITE FOR RESIDUE HEM A 486
06
AC6
SOFTWARE
LEU A:40 , ASP A:44 , ARG B:51 , HIS B:54 , ARG B:91 , GLY B:110 , ALA B:125 , GLY B:126 , ASN B:127 , PRO B:137 , PHE B:140 , GLY B:195 , SER B:196 , HIS B:197 , LEU B:278 , PHE B:313 , MET B:329 , ARG B:333 , TYR B:337 , ALA B:340 , GLN B:341 , ARG B:344 , HOH B:6500 , HOH B:6502 , HOH B:6584
BINDING SITE FOR RESIDUE HEM B 486
07
AC7
SOFTWARE
ARG C:51 , OMT C:53 , HIS C:54 , ARG C:91 , GLY C:110 , SER C:112 , ALA C:125 , GLY C:126 , ASN C:127 , PRO C:137 , PHE C:140 , GLY C:195 , SER C:196 , HIS C:197 , LEU C:278 , PHE C:313 , MET C:329 , ARG C:333 , TYR C:337 , GLN C:341 , ARG C:344 , HOH C:5502 , HOH C:5527 , HOH C:5532 , LEU D:40 , ASP D:44
BINDING SITE FOR RESIDUE HEM C 485
08
AC8
SOFTWARE
ASP C:44 , ARG D:51 , HIS D:54 , ARG D:91 , GLY D:110 , ALA D:125 , GLY D:126 , ASN D:127 , PRO D:137 , PHE D:140 , GLY D:195 , SER D:196 , HIS D:197 , LEU D:278 , PHE D:313 , MET D:329 , ARG D:333 , ALA D:336 , TYR D:337 , ALA D:340 , GLN D:341 , ARG D:344 , HOH D:5517 , HOH D:5545 , HOH D:5589
BINDING SITE FOR RESIDUE HEM D 485
09
AC9
SOFTWARE
ARG E:51 , OMT E:53 , HIS E:54 , ARG E:91 , GLY E:110 , SER E:112 , ALA E:125 , GLY E:126 , ASN E:127 , PRO E:137 , PHE E:140 , GLY E:195 , SER E:196 , HIS E:197 , PHE E:313 , MET E:329 , ARG E:333 , TYR E:337 , ALA E:340 , GLN E:341 , ARG E:344 , HOH E:5513 , HOH E:5521 , HOH E:5602 , LEU F:40 , ASP F:44
BINDING SITE FOR RESIDUE HEM E 486
10
BC1
SOFTWARE
LEU E:40 , ASP E:44 , ARG F:51 , OMT F:53 , HIS F:54 , ARG F:91 , GLY F:110 , SER F:112 , ALA F:125 , GLY F:126 , ASN F:127 , PRO F:137 , PHE F:140 , GLY F:195 , SER F:196 , HIS F:197 , LEU F:278 , PHE F:313 , MET F:329 , ARG F:333 , TYR F:337 , GLN F:341 , ARG F:344 , HOH F:8509 , HOH F:8527 , HOH F:8570
BINDING SITE FOR RESIDUE HEM F 486
11
BC2
SOFTWARE
ARG G:51 , HIS G:54 , ARG G:91 , GLY G:110 , SER G:112 , ALA G:125 , GLY G:126 , ASN G:127 , PRO G:137 , PHE G:140 , GLY G:195 , SER G:196 , HIS G:197 , LEU G:278 , PHE G:313 , MET G:329 , ARG G:333 , TYR G:337 , GLN G:341 , ARG G:344 , HOH G:5510 , HOH G:5517 , HOH G:5566 , LEU H:40 , ASP H:44
BINDING SITE FOR RESIDUE HEM G 485
12
BC3
SOFTWARE
ASP G:44 , ARG H:51 , OMT H:53 , HIS H:54 , ARG H:91 , GLY H:110 , SER H:112 , ALA H:125 , GLY H:126 , ASN H:127 , PRO H:137 , PHE H:140 , GLY H:195 , SER H:196 , HIS H:197 , LEU H:278 , PHE H:313 , MET H:329 , ARG H:333 , TYR H:337 , GLN H:341 , ARG H:344 , HOH H:7501 , HOH H:7567 , HOH H:7628 , HOH H:7891
BINDING SITE FOR RESIDUE HEM H 485
13
BC4
SOFTWARE
VAL A:34 , LEU A:37 , HOH A:5753 , ASN C:314 , ALA C:316 , LEU C:334 , PHE C:335 , GLY C:338 , ASP C:339 , ARG C:342 , HOH C:5770
BINDING SITE FOR RESIDUE GOL C 5487
14
BC5
SOFTWARE
VAL B:34 , LEU B:37 , HOH B:6802 , ASN D:314 , ALA D:316 , PHE D:335 , GLY D:338 , ASP D:339 , ARG D:342 , HOH D:5688
BINDING SITE FOR RESIDUE GOL D 5488
15
BC6
SOFTWARE
ASN A:314 , ALA A:316 , LEU A:334 , PHE A:335 , GLY A:338 , ASP A:339 , ARG A:342 , VAL C:34 , LEU C:37 , HOH C:5755 , HOH C:5889
BINDING SITE FOR RESIDUE GOL A 5489
16
BC7
SOFTWARE
ASN B:314 , ALA B:316 , LEU B:334 , PHE B:335 , GLY B:338 , ASP B:339 , ARG B:342 , HOH B:6828 , HOH B:6941 , VAL D:34
BINDING SITE FOR RESIDUE GOL B 5490
17
BC8
SOFTWARE
VAL E:34 , LEU E:37 , HOH E:5768 , ASN G:314 , ALA G:316 , LEU G:334 , PHE G:335 , GLY G:338 , ASP G:339 , ARG G:342 , HOH G:5693
BINDING SITE FOR RESIDUE GOL G 5491
18
BC9
SOFTWARE
VAL F:34 , ASN H:314 , ALA H:316 , LEU H:334 , PHE H:335 , GLY H:338 , ASP H:339 , ARG H:342 , HOH H:7721 , HOH H:7757
BINDING SITE FOR RESIDUE GOL H 5492
19
CC1
SOFTWARE
ASN E:314 , ALA E:316 , LEU E:334 , PHE E:335 , GLY E:338 , ASP E:339 , ARG E:342 , HOH E:5730 , HOH E:5955 , VAL G:34 , LEU G:37
BINDING SITE FOR RESIDUE GOL E 5493
20
CC2
SOFTWARE
ASN F:314 , ALA F:316 , LEU F:334 , PHE F:335 , GLY F:338 , ASP F:339 , ARG F:342 , HOH F:8652 , HOH F:8704 , VAL H:34 , LEU H:37
BINDING SITE FOR RESIDUE GOL F 5494
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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End label:
Sorry, no Info available
[
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Exons
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Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2isaa_ (A:)
1b: SCOP_d2isab_ (B:)
1c: SCOP_d2isac_ (C:)
1d: SCOP_d2isad_ (D:)
1e: SCOP_d2isae_ (E:)
1f: SCOP_d2isaf_ (F:)
1g: SCOP_d2isag_ (G:)
1h: SCOP_d2isah_ (H:)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Heme-dependent catalase-like
(82)
Superfamily
:
Heme-dependent catalase-like
(82)
Family
:
Heme-dependent catalases
(80)
Protein domain
:
automated matches
(32)
Vibrio salmonicida [TaxId: 316275]
(1)
1a
d2isaa_
A:
1b
d2isab_
B:
1c
d2isac_
C:
1d
d2isad_
D:
1e
d2isae_
E:
1f
d2isaf_
F:
1g
d2isag_
G:
1h
d2isah_
H:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
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Sorry, no Info available
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Asym.Unit (725 KB)
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