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2IS9
Asym. Unit
Info
Asym.Unit (45 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (78 KB)
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(1)
Title
:
STRUCTURE OF YEAST DCN-1
Authors
:
X. Yang, J. Zhou, L. Sun, Z. Wei, J. Gao, W. Gong, R. M. Xu, Z. Rao, Y. Liu
Date
:
16 Oct 06 (Deposition) - 26 Jun 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.92
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Ubiquitin, Dcn1, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Yang, J. Zhou, L. Sun, Z. Wei, J. Gao, W. Gong, R. M. Xu, Z. Rao, Y. Liu
Structural Basis For The Function Of Dcn-1 In Protein Neddylation.
J. Biol. Chem. V. 282 24490 2007
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3a: PLATINUM (II) ION (PTa)
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No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3
PT
1
Ligand/Ion
PLATINUM (II) ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:230 , CL A:1110 , CL A:1118
BINDING SITE FOR RESIDUE PT A 1109
2
AC2
SOFTWARE
GLU A:128 , ASP A:129 , SER A:132 , PT A:1109
BINDING SITE FOR RESIDUE CL A 1110
3
AC3
SOFTWARE
LEU A:233
BINDING SITE FOR RESIDUE CL A 1111
4
AC4
SOFTWARE
ASP A:226
BINDING SITE FOR RESIDUE CL A 1112
5
AC5
SOFTWARE
GLU A:128 , MET A:230 , MES A:1001 , PT A:1109 , HOH A:1199
BINDING SITE FOR RESIDUE CL A 1118
6
AC6
SOFTWARE
TYR A:71 , ARG A:127 , GLU A:128 , MET A:230 , LEU A:233 , ALA A:252 , ALA A:253 , TRP A:254 , CL A:1118 , HOH A:1179 , HOH A:1209 , HOH A:1257
BINDING SITE FOR RESIDUE MES A 1001
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: DCUN1 (A:70-266)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DCUN1
PS51229
DCUN1 domain profile.
DCN1_YEAST
70-266
1
A:70-266
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Exons
(1, 1)
Info
All Exons
Exon 1.2 (A:66-269)
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1: Boundary 1.1/1.2
2: Boundary 1.2/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YLR128W
1
YLR128W.1
XII:398531-398533
3
DCN1_YEAST
1-1
1
0
-
-
1.2
YLR128W
2
YLR128W.2
XII:398628-399434
807
DCN1_YEAST
2-269
268
1
A:66-269
204
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (45 KB)
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