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2IS4
Asym. Unit
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Asym.Unit (233 KB)
Biol.Unit 1 (225 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF UVRD-DNA-ADPNP TERNARY COMPLEX
Authors
:
W. Yang, J. Y. Lee
Date
:
16 Oct 06 (Deposition) - 09 Jan 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Dna Helicase, Hydrolase/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Y. Lee, W. Yang
Uvrd Helicase Unwinds Dna One Base Pair At A Time By A Two-Part Power Stroke.
Cell(Cambridge, Mass. ) V. 127 1349 2006
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ANP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:36 , GLU A:221 , ANP A:700 , HOH A:1002 , HOH A:1003 , HOH A:1004
BINDING SITE FOR RESIDUE MG A 1001
2
AC2
SOFTWARE
THR B:36 , GLU B:221 , ANP B:701 , HOH B:1003 , HOH B:1004 , HOH B:1005
BINDING SITE FOR RESIDUE MG B 1002
3
AC3
SOFTWARE
SER A:9 , GLN A:14 , ALA A:31 , GLY A:32 , SER A:33 , GLY A:34 , LYS A:35 , THR A:36 , ARG A:37 , ARG A:73 , GLU A:221 , GLN A:251 , TYR A:283 , ARG A:284 , GLY A:564 , GLU A:566 , ARG A:605 , MG A:1001 , HOH A:1002 , HOH A:1003 , HOH A:1004 , HOH A:1063
BINDING SITE FOR RESIDUE ANP A 700
4
AC4
SOFTWARE
SER B:9 , GLN B:14 , ALA B:31 , GLY B:32 , SER B:33 , GLY B:34 , LYS B:35 , THR B:36 , ARG B:37 , ARG B:73 , GLU B:221 , GLN B:251 , TYR B:283 , ARG B:284 , GLY B:564 , GLU B:566 , ARG B:605 , MG B:1002 , HOH B:1003 , HOH B:1004 , HOH B:1058
BINDING SITE FOR RESIDUE ANP B 701
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_UVRD_ECOLI_001 (G30D, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_UVRD_ECOLI_001
*
G
30
D
UVRD_ECOLI
---
---
A/B
G
30
D
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: UVRD_HELICASE_ATP_BIND (A:8-286,B:8-286)
2: UVRD_HELICASE_CTER (A:287-564,B:287-564)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UVRD_HELICASE_ATP_BIND
PS51198
UvrD-like DNA helicase ATP-binding domain profile.
UVRD_ECOLI
8-286
2
A:8-286
B:8-286
2
UVRD_HELICASE_CTER
PS51217
UvrD-like DNA helicase C-terminal domain profile.
UVRD_ECOLI
287-564
2
A:287-564
B:287-564
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_2is4A03 (A:280-381,A:543-662)
1b: CATH_2is4B03 (B:280-381,B:548-658)
1c: CATH_2is4A01 (A:1-110,A:190-279)
1d: CATH_2is4B01 (B:1-110,B:190-279)
2a: CATH_2is4A02 (A:111-189)
2b: CATH_2is4B02 (B:111-189)
3a: CATH_2is4A04 (A:382-542)
3b: CATH_2is4B04 (B:382-538)
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)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
[unclassified]
(24)
1a
2is4A03
A:280-381,A:543-662
1b
2is4B03
B:280-381,B:548-658
1c
2is4A01
A:1-110,A:190-279
1d
2is4B01
B:1-110,B:190-279
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
[code=1.10.10.160, no name defined]
(9)
[unclassified]
(6)
2a
2is4A02
A:111-189
2b
2is4B02
B:111-189
Topology
:
PCRA; domain 4
(12)
Homologous Superfamily
:
PCRA; domain 4
(12)
[unclassified]
(6)
3a
2is4A04
A:382-542
3b
2is4B04
B:382-538
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Pfam Domains
(0, 0)
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