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2IS1
Asym. Unit
Info
Asym.Unit (227 KB)
Biol.Unit 1 (116 KB)
Biol.Unit 2 (109 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF UVRD-DNA-SO4 COMPLEX
Authors
:
W. Yang, J. Y. Lee
Date
:
16 Oct 06 (Deposition) - 09 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,C,D (1x)
Biol. Unit 2: B,E,F (1x)
Keywords
:
Dna Helicase, Hydrolase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Y. Lee, W. Yang
Uvrd Helicase Unwinds Dna One Base Pair At A Time By A Two-Part Power Stroke.
Cell(Cambridge, Mass. ) V. 127 1349 2006
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: MERCURY (II) ION (HGa)
2b: MERCURY (II) ION (HGb)
2c: MERCURY (II) ION (HGc)
2d: MERCURY (II) ION (HGd)
2e: MERCURY (II) ION (HGe)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
HG
5
Ligand/Ion
MERCURY (II) ION
3
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:322 , ALA A:323 , GLU A:616 , ARG A:645
BINDING SITE FOR RESIDUE HG A 681
02
AC2
SOFTWARE
ASN A:288 , CYS A:640
BINDING SITE FOR RESIDUE HG A 682
03
AC3
SOFTWARE
ARG A:22 , CYS A:52
BINDING SITE FOR RESIDUE HG A 683
04
AC4
SOFTWARE
CYS B:322 , ALA B:323
BINDING SITE FOR RESIDUE HG B 681
05
AC5
SOFTWARE
ASN B:288 , CYS B:640
BINDING SITE FOR RESIDUE HG B 682
06
AC6
SOFTWARE
ALA A:31 , GLN A:251 , ARG A:284 , GLY A:564 , ARG A:605 , GOL A:686
BINDING SITE FOR RESIDUE SO4 A 684
07
AC7
SOFTWARE
ALA B:31 , GLN B:251 , ARG B:284 , ARG B:605
BINDING SITE FOR RESIDUE SO4 B 683
08
AC8
SOFTWARE
GLY A:34 , THR A:36 , ARG A:37 , ARG A:73 , GOL A:686
BINDING SITE FOR RESIDUE SO4 A 685
09
AC9
SOFTWARE
LYS A:35 , THR A:36 , GLU A:69 , SO4 A:684 , SO4 A:685
BINDING SITE FOR RESIDUE GOL A 686
10
BC1
SOFTWARE
GLY B:34 , THR B:36 , ARG B:37 , ARG B:73
BINDING SITE FOR RESIDUE GOL B 684
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_UVRD_ECOLI_001 (G30D, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_UVRD_ECOLI_001
*
G
30
D
UVRD_ECOLI
---
---
A/B
G
30
D
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: UVRD_HELICASE_ATP_BIND (A:8-286,B:8-286)
2: UVRD_HELICASE_CTER (A:287-564,B:287-564)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UVRD_HELICASE_ATP_BIND
PS51198
UvrD-like DNA helicase ATP-binding domain profile.
UVRD_ECOLI
8-286
2
A:8-286
B:8-286
2
UVRD_HELICASE_CTER
PS51217
UvrD-like DNA helicase C-terminal domain profile.
UVRD_ECOLI
287-564
2
A:287-564
B:287-564
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_2is1A03 (A:280-381,A:545-653)
1b: CATH_2is1B03 (B:280-381,B:552-644)
1c: CATH_2is1A01 (A:2-110,A:190-279)
1d: CATH_2is1B01 (B:3-110,B:190-279)
2a: CATH_2is1B02 (B:111-189)
2b: CATH_2is1A02 (A:111-189)
3a: CATH_2is1A04 (A:382-544)
3b: CATH_2is1B04 (B:382-546)
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Classes
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)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
[unclassified]
(24)
1a
2is1A03
A:280-381,A:545-653
1b
2is1B03
B:280-381,B:552-644
1c
2is1A01
A:2-110,A:190-279
1d
2is1B01
B:3-110,B:190-279
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
[code=1.10.10.160, no name defined]
(9)
[unclassified]
(6)
2a
2is1B02
B:111-189
2b
2is1A02
A:111-189
Topology
:
PCRA; domain 4
(12)
Homologous Superfamily
:
PCRA; domain 4
(12)
[unclassified]
(6)
3a
2is1A04
A:382-544
3b
2is1B04
B:382-546
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (227 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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