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Getting 'Exon' information from database.
2IRW
Asym. Unit
Info
Asym.Unit (343 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (87 KB)
Biol.Unit 3 (87 KB)
Biol.Unit 4 (89 KB)
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(1)
Title
:
HUMAN 11-BETA-HYDROXYSTEROID DEHYDROGENASE (HSD1) WITH NADP AND ADAMANTANE ETHER INHIBITOR
Authors
:
K. L. Longenecker, J. R Patel, J. Russell, W. Qin
Date
:
16 Oct 06 (Deposition) - 23 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Hsd1, Nadp, Inhibitor, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Patel, Q. Shuai, J. Dinges, M. Winn, M. Pliushchev, S. Fung, K. Monzon, W. Chiou, J. Wang, L. Pan, S. Wagaw, K. Engstrom, F. A. Kerdesky, K. Longenecker, R. Judge, W. Qin, H. M. Imade, D. Stolarik, D. W. Beno, M. Brune, L. E. Chovan, H. L. Sham, P. Jacobson, J. T. Link
Discovery Of Adamantane Ethers As Inhibitors Of 11Beta-Hsd-1: Synthesis And Biological Evaluation.
Bioorg. Med. Chem. Lett. V. 17 750 2007
[
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
1b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
1c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
1d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
1e: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPe)
1f: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPf)
1g: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPg)
1h: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPh)
2a: (1S,3R,4S,5S,7S)-4-{[2-(4-METHOXYP... (NN4a)
2b: (1S,3R,4S,5S,7S)-4-{[2-(4-METHOXYP... (NN4b)
2c: (1S,3R,4S,5S,7S)-4-{[2-(4-METHOXYP... (NN4c)
2d: (1S,3R,4S,5S,7S)-4-{[2-(4-METHOXYP... (NN4d)
2e: (1S,3R,4S,5S,7S)-4-{[2-(4-METHOXYP... (NN4e)
2f: (1S,3R,4S,5S,7S)-4-{[2-(4-METHOXYP... (NN4f)
2g: (1S,3R,4S,5S,7S)-4-{[2-(4-METHOXYP... (NN4g)
2h: (1S,3R,4S,5S,7S)-4-{[2-(4-METHOXYP... (NN4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAP
8
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2
NN4
8
Ligand/Ion
(1S,3R,4S,5S,7S)-4-{[2-(4-METHOXYPHENOXY)-2-METHYLPROPANOYL]AMINO}ADAMANTANE-1-CARBOXAMIDE
[
close Hetero Component info
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:41 , ALA A:42 , SER A:43 , LYS A:44 , ILE A:46 , ALA A:65 , ARG A:66 , SER A:67 , THR A:92 , MET A:93 , ASN A:119 , ILE A:121 , VAL A:168 , SER A:169 , SER A:170 , TYR A:183 , LYS A:187 , LEU A:215 , GLY A:216 , LEU A:217 , ILE A:218 , THR A:220 , THR A:222 , ALA A:223 , NN4 A:911
BINDING SITE FOR RESIDUE NAP A 901
02
AC2
SOFTWARE
GLY B:41 , ALA B:42 , SER B:43 , LYS B:44 , GLY B:45 , ILE B:46 , ALA B:65 , ARG B:66 , SER B:67 , THR B:92 , MET B:93 , ASN B:119 , ILE B:121 , VAL B:168 , SER B:169 , SER B:170 , TYR B:183 , LYS B:187 , LEU B:215 , GLY B:216 , LEU B:217 , ILE B:218 , THR B:220 , THR B:222 , ALA B:223 , NN4 B:911
BINDING SITE FOR RESIDUE NAP B 901
03
AC3
SOFTWARE
GLY C:41 , ALA C:42 , SER C:43 , LYS C:44 , GLY C:45 , ILE C:46 , ALA C:65 , ARG C:66 , SER C:67 , GLY C:91 , THR C:92 , MET C:93 , ASN C:119 , ILE C:121 , VAL C:168 , SER C:169 , SER C:170 , TYR C:183 , LYS C:187 , LEU C:215 , GLY C:216 , LEU C:217 , ILE C:218 , THR C:220 , THR C:222 , ALA C:223 , NN4 C:911
BINDING SITE FOR RESIDUE NAP C 901
04
AC4
SOFTWARE
GLY D:41 , ALA D:42 , SER D:43 , LYS D:44 , GLY D:45 , ILE D:46 , ALA D:65 , ARG D:66 , SER D:67 , GLY D:91 , THR D:92 , MET D:93 , ASN D:119 , ILE D:121 , VAL D:168 , SER D:169 , SER D:170 , TYR D:183 , LYS D:187 , LEU D:215 , GLY D:216 , LEU D:217 , ILE D:218 , THR D:220 , THR D:222 , ALA D:223 , NN4 D:911
BINDING SITE FOR RESIDUE NAP D 901
05
AC5
SOFTWARE
GLY E:41 , ALA E:42 , SER E:43 , LYS E:44 , GLY E:45 , ILE E:46 , ALA E:65 , ARG E:66 , SER E:67 , GLY E:91 , THR E:92 , MET E:93 , ASN E:119 , ILE E:121 , VAL E:168 , SER E:169 , SER E:170 , TYR E:183 , LYS E:187 , LEU E:215 , GLY E:216 , LEU E:217 , ILE E:218 , THR E:220 , THR E:222 , ALA E:223 , NN4 E:911
BINDING SITE FOR RESIDUE NAP E 901
06
AC6
SOFTWARE
GLY F:41 , ALA F:42 , SER F:43 , LYS F:44 , GLY F:45 , ILE F:46 , ALA F:65 , ARG F:66 , SER F:67 , THR F:92 , MET F:93 , ASN F:119 , ILE F:121 , SER F:169 , SER F:170 , TYR F:183 , LYS F:187 , LEU F:215 , GLY F:216 , LEU F:217 , ILE F:218 , THR F:220 , THR F:222 , ALA F:223 , NN4 F:911
BINDING SITE FOR RESIDUE NAP F 901
07
AC7
SOFTWARE
GLY G:41 , SER G:43 , LYS G:44 , GLY G:45 , ILE G:46 , ALA G:65 , ARG G:66 , SER G:67 , GLY G:91 , THR G:92 , MET G:93 , ASN G:119 , ILE G:121 , VAL G:168 , SER G:169 , SER G:170 , TYR G:183 , LYS G:187 , LEU G:215 , GLY G:216 , LEU G:217 , ILE G:218 , THR G:220 , THR G:222 , ALA G:223 , NN4 G:911
BINDING SITE FOR RESIDUE NAP G 901
08
AC8
SOFTWARE
GLY H:41 , ALA H:42 , SER H:43 , GLY H:45 , ILE H:46 , ALA H:65 , ARG H:66 , SER H:67 , THR H:92 , MET H:93 , ASN H:119 , ILE H:121 , VAL H:168 , SER H:169 , SER H:170 , TYR H:183 , LYS H:187 , LEU H:215 , GLY H:216 , LEU H:217 , ILE H:218 , THR H:220 , THR H:222 , ALA H:223 , NN4 H:911
BINDING SITE FOR RESIDUE NAP H 901
09
AC9
SOFTWARE
ILE A:121 , THR A:124 , SER A:170 , ALA A:172 , TYR A:177 , PRO A:178 , TYR A:183 , THR A:222 , VAL A:231 , NAP A:901 , TYR B:284
BINDING SITE FOR RESIDUE NN4 A 911
10
BC1
SOFTWARE
TYR A:284 , ILE B:121 , THR B:124 , SER B:170 , ALA B:172 , TYR B:177 , PRO B:178 , TYR B:183 , THR B:222 , VAL B:231 , NAP B:901
BINDING SITE FOR RESIDUE NN4 B 911
11
BC2
SOFTWARE
ILE C:121 , THR C:124 , SER C:170 , TYR C:177 , PRO C:178 , TYR C:183 , LEU C:217 , THR C:222 , VAL C:231 , MET C:233 , NAP C:901 , TYR D:284
BINDING SITE FOR RESIDUE NN4 C 911
12
BC3
SOFTWARE
ILE D:121 , THR D:124 , SER D:170 , TYR D:177 , PRO D:178 , TYR D:183 , LEU D:217 , THR D:222 , VAL D:231 , MET D:233 , NAP D:901
BINDING SITE FOR RESIDUE NN4 D 911
13
BC4
SOFTWARE
ILE E:121 , THR E:124 , SER E:170 , TYR E:177 , PRO E:178 , TYR E:183 , ALA E:223 , NAP E:901 , TYR F:284
BINDING SITE FOR RESIDUE NN4 E 911
14
BC5
SOFTWARE
ILE F:121 , THR F:124 , SER F:170 , PRO F:178 , LEU F:217 , VAL F:231 , MET F:233 , NAP F:901
BINDING SITE FOR RESIDUE NN4 F 911
15
BC6
SOFTWARE
ILE G:121 , THR G:124 , SER G:170 , ALA G:172 , TYR G:177 , PRO G:178 , TYR G:183 , THR G:222 , ALA G:223 , VAL G:227 , VAL G:231 , NAP G:901 , TYR H:284
BINDING SITE FOR RESIDUE NN4 G 911
16
BC7
SOFTWARE
TYR G:284 , ILE H:121 , THR H:124 , SER H:170 , TYR H:177 , PRO H:178 , TYR H:183 , ALA H:226 , VAL H:231 , NAP H:901
BINDING SITE FOR RESIDUE NN4 H 911
[
close Site info
]
SAPs(SNPs)/Variants
(2, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_035845 (V148E, chain A/B/C/D/E/F/G/H, )
2: VAR_DHI1_HUMAN_CCDS1489_1_01 (V148E, chain A/B/C/D/E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035845
V
148
E
DHI1_HUMAN
Unclassified
---
A/B/C/D/E/F/G/H
V
148
E
2
CancerSNP
VAR_DHI1_HUMAN_CCDS1489_1_01
*
V
148
E
DHI1_HUMAN
Disease (Breast cancer)
---
A/B/C/D/E/F/G/H
V
148
E
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:170-198,B:170-198,C:170-198,D:17...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
DHI1_HUMAN
170-198
8
A:170-198
B:170-198
C:170-198
D:170-198
E:170-198
F:170-198
G:170-198
H:170-198
[
close PROSITE info
]
Exons
(6, 48)
Info
All Exons
Exon 1.2b (A:26-30 | B:26-30 | C:26-30 | D:26...)
Exon 1.3 (A:30-73 | B:30-73 | C:30-73 | D:30...)
Exon 1.4 (A:74-111 | B:74-111 | C:74-111 | D...)
Exon 1.5 (A:111-173 | B:111-173 | C:111-173 ...)
Exon 1.6 (A:173-221 | B:173-221 | C:173-221 ...)
Exon 1.7a (A:221-289 | B:221-289 | C:221-282 ...)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.2b
2: Boundary 1.2b/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7a
7: Boundary 1.7a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367028
1a
ENSE00001443288
chr1:
209859510-209859630
121
DHI1_HUMAN
-
0
0
-
-
1.2b
ENST00000367028
2b
ENSE00001443287
chr1:
209878240-209878375
136
DHI1_HUMAN
1-30
30
8
A:26-30
B:26-30
C:26-30
D:26-30
E:26-30
F:26-30
G:26-30
H:26-30
5
5
5
5
5
5
5
5
1.3
ENST00000367028
3
ENSE00000792110
chr1:
209879156-209879286
131
DHI1_HUMAN
30-73
44
8
A:30-73
B:30-73
C:30-73
D:30-73
E:30-73
F:30-73
G:30-73
H:30-73
44
44
44
44
44
44
44
44
1.4
ENST00000367028
4
ENSE00000792111
chr1:
209880054-209880165
112
DHI1_HUMAN
74-111
38
8
A:74-111
B:74-111
C:74-111
D:74-111
E:74-111
F:74-111
G:74-111
H:74-111
38
38
38
38
38
38
38
38
1.5
ENST00000367028
5
ENSE00000792112
chr1:
209880288-209880473
186
DHI1_HUMAN
111-173
63
8
A:111-173
B:111-173
C:111-173
D:111-173
E:111-173
F:111-173
G:111-173
H:111-173
63
63
63
63
63
63
63
63
1.6
ENST00000367028
6
ENSE00000792113
chr1:
209905781-209905924
144
DHI1_HUMAN
173-221
49
8
A:173-221
B:173-221
C:173-221
D:173-221
E:173-221
F:173-221
G:173-221
H:173-221
49
49
49
49
49
49
49
49
1.7a
ENST00000367028
7a
ENSE00001443286
chr1:
209907649-209908209
561
DHI1_HUMAN
221-292
72
8
A:221-289
B:221-289
C:221-282
D:221-289
E:221-282
F:221-289
G:221-289
H:221-289
69
69
62
69
62
69
69
69
[
close EXON info
]
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2irwa_ (A:)
1b: SCOP_d2irwb_ (B:)
1c: SCOP_d2irwc_ (C:)
1d: SCOP_d2irwd_ (D:)
1e: SCOP_d2irwe_ (E:)
1f: SCOP_d2irwf_ (F:)
1g: SCOP_d2irwg_ (G:)
1h: SCOP_d2irwh_ (H:)
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
11-beta-hydroxysteroid dehydrogenase 1
(34)
Human (Homo sapiens) [TaxId: 9606]
(25)
1a
d2irwa_
A:
1b
d2irwb_
B:
1c
d2irwc_
C:
1d
d2irwd_
D:
1e
d2irwe_
E:
1f
d2irwf_
F:
1g
d2irwg_
G:
1h
d2irwh_
H:
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2irwC00 (C:26-282)
1b: CATH_2irwE00 (E:26-282)
1c: CATH_2irwA00 (A:26-289)
1d: CATH_2irwB00 (B:26-289)
1e: CATH_2irwD00 (D:26-289)
1f: CATH_2irwF00 (F:26-289)
1g: CATH_2irwG00 (G:26-289)
1h: CATH_2irwH00 (H:26-289)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
2irwC00
C:26-282
1b
2irwE00
E:26-282
1c
2irwA00
A:26-289
1d
2irwB00
B:26-289
1e
2irwD00
D:26-289
1f
2irwF00
F:26-289
1g
2irwG00
G:26-289
1h
2irwH00
H:26-289
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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