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2IPU
Biol. Unit 1
Info
Asym.Unit (147 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (74 KB)
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(1)
Title
:
PFA1 FAB FRAGMENT COMPLEXED WITH ABETA 1-8 PEPTIDE
Authors
:
A. S. Gardberg, C. Dealwis
Date
:
12 Oct 06 (Deposition) - 09 Oct 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : G,H,K,L,P,Q
Biol. Unit 1: H,L,Q (1x)
Biol. Unit 2: G,K,P (1x)
Keywords
:
Wwddd, Cdr, Abeta, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. S. Gardberg, L. T. Dice, S. Ou, R. L. Rich, E. Helmbrecht, J. Ko, R. Wetzel, D. G. Myszka, P. H. Patterson, C. Dealwis
Molecular Basis For Passive Immunotherapy Of Alzheimer'S Disease
Proc. Natl. Acad. Sci. Usa V. 104 15659 2007
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: ACETAMIDE (ACMa)
1b: ACETAMIDE (ACMb)
1c: ACETAMIDE (ACMc)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACM
2
Ligand/Ion
ACETAMIDE
2
GOL
3
Ligand/Ion
GLYCEROL
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC6 (SOFTWARE)
6: AC8 (SOFTWARE)
7: AC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL H:127 , CYS H:128 , PRO L:118 , ASN L:209 , GLU L:212 , CYS L:213
BINDING SITE FOR RESIDUE ACM L 1219
2
AC2
SOFTWARE
CYS H:128 , GLY H:214 , PRO H:215 , ASP K:60 , GLU L:212 , CYS L:213
BINDING SITE FOR RESIDUE ACM H 1138
3
AC4
SOFTWARE
THR H:176 , SER H:178 , LEU L:159 , SER L:175 , SER L:176 , THR L:177
BINDING SITE FOR RESIDUE GOL L 907
4
AC5
SOFTWARE
PRO L:59 , ARG L:61 , PHE L:62 , GLU L:81 , ASP L:82
BINDING SITE FOR RESIDUE GOL L 909
5
AC6
SOFTWARE
SER L:121 , GLU L:122 , THR L:125
BINDING SITE FOR RESIDUE GOL L 911
6
AC8
SOFTWARE
ALA H:201 , SER H:202 , VAL K:51 , GLY K:66 , ARG L:187
BINDING SITE FOR RESIDUE GOL K 903
7
AC9
SOFTWARE
ALA G:201 , SER G:202 , SER G:203 , ARG K:187 , GLY L:66
BINDING SITE FOR RESIDUE GOL K 905
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_044424 (D7N, chain Q, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_044424
D
678
N
A4_HUMAN
Disease (AD1)
---
Q
D
7
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2ipuK02 (K:109-208)
1b: CATH_2ipuK01 (K:1-107)
1c: CATH_2ipuL01 (L:1-107)
1d: CATH_2ipuH02 (H:114-213)
1e: CATH_2ipuG02 (G:114-213)
1f: CATH_2ipuL02 (L:109-208)
1g: CATH_2ipuG01 (G:1-113)
1h: CATH_2ipuH01 (H:1-113)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
2ipuK02
K:109-208
1b
2ipuK01
K:1-107
1c
2ipuL01
L:1-107
1d
2ipuH02
H:114-213
1e
2ipuG02
G:114-213
1f
2ipuL02
L:109-208
1g
2ipuG01
G:1-113
1h
2ipuH01
H:1-113
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Show PDB file:
Asym.Unit (147 KB)
Header - Asym.Unit
Biol.Unit 1 (72 KB)
Header - Biol.Unit 1
Biol.Unit 2 (74 KB)
Header - Biol.Unit 2
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