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2IPO
Asym. Unit
Info
Asym.Unit (161 KB)
Biol.Unit 1 (459 KB)
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(1)
Title
:
E. COLI ASPARTATE TRANSCARBAMOYLASE COMPLEXED WITH N-PHOSPHONACETYL-L-ASPARAGINE
Authors
:
J. P. Cardia, J. Eldo, J. Xia, E. M. O'Day, H. Tsuruta, E. R. Kantrowitz
Date
:
12 Oct 06 (Deposition) - 28 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (3x)
Keywords
:
Aspartate Transcarbamoylase, Allosteric, Inhibitor Design, Domain Closure, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Cardia, J. Eldo, J. Xia, E. M. O'Day, H. Tsuruta, K. R. Gryncel, E. R. Kantrowitz
Use Of L-Asparagine And N-Phosphonacetyl-L-Asparagine To Investigate The Linkage Of Catalysis And Homotropic Cooperativity In E. Coli Aspartate Transcarbomoylase.
Proteins V. 71 1088 2008
(for further references see the
PDB file header
)
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: N~2~-(PHOSPHONOACETYL)-L-ASPARAGIN... (1IPa)
1b: N~2~-(PHOSPHONOACETYL)-L-ASPARAGIN... (1IPb)
2a: MALEIC ACID (MAEa)
2b: MALEIC ACID (MAEb)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1IP
2
Ligand/Ion
N~2~-(PHOSPHONOACETYL)-L-ASPARAGINE
2
MAE
2
Ligand/Ion
MALEIC ACID
3
MPD
2
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
4
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS B:109 , CYS B:114 , CYS B:138 , CYS B:141
BINDING SITE FOR RESIDUE ZN B 201
2
AC2
SOFTWARE
CYS D:109 , CYS D:114 , CYS D:138 , CYS D:141
BINDING SITE FOR RESIDUE ZN D 201
3
AC3
SOFTWARE
SER A:52 , THR A:53 , ARG A:54 , THR A:55 , SER A:80 , LYS A:84 , ARG A:105 , HIS A:134 , GLN A:137 , ARG A:167 , THR A:168 , ARG A:229 , GLN A:231 , LEU A:267 , HOH A:408 , HOH A:409 , HOH A:436 , HOH A:448 , HOH A:507
BINDING SITE FOR RESIDUE 1IP A 401
4
AC4
SOFTWARE
PRO C:3 , LEU C:4 , LYS C:7 , ASP C:14 , ASP C:19
BINDING SITE FOR RESIDUE MAE C 411
5
AC5
SOFTWARE
SER C:52 , THR C:53 , ARG C:54 , THR C:55 , SER C:80 , LYS C:84 , ARG C:105 , HIS C:134 , GLN C:137 , ARG C:167 , THR C:168 , ARG C:229 , GLN C:231 , LEU C:267 , MAE C:412 , HOH C:419 , HOH C:444 , HOH C:446
BINDING SITE FOR RESIDUE 1IP C 401
6
AC6
SOFTWARE
ARG C:54 , THR C:55 , HIS C:134 , GLN C:137 , LEU C:140 , PRO C:266 , ALA C:289 , ARG C:296 , 1IP C:401 , HOH C:441 , HOH C:483
BINDING SITE FOR RESIDUE MAE C 412
7
AC7
SOFTWARE
PHE A:48 , GLU A:50 , ALA A:51 , SER A:52 , ARG A:56 , PHE A:73 , SER A:74 , ASN A:78 , THR A:79
BINDING SITE FOR RESIDUE MPD A 402
8
AC8
SOFTWARE
LYS C:232 , TYR C:240
BINDING SITE FOR RESIDUE MPD C 413
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CARBAMOYLTRANSFERASE (A:48-55,C:48-55)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBAMOYLTRANSFERASE
PS00097
Aspartate and ornithine carbamoyltransferases signature.
PYRB_ECOLI
49-56
2
A:48-55
C:48-55
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 8)
Info
All SCOP Domains
1a: SCOP_d2ipob1 (B:1-100)
1b: SCOP_d2ipod1 (D:1-100)
2a: SCOP_d2ipoa1 (A:1-150)
2b: SCOP_d2ipoa2 (A:151-310)
2c: SCOP_d2ipoc1 (C:1-150)
2d: SCOP_d2ipoc2 (C:151-310)
3a: SCOP_d2ipob2 (B:101-153)
3b: SCOP_d2ipod2 (D:101-153)
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)
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)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
(63)
Family
:
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
(62)
Protein domain
:
Aspartate carbamoyltransferase
(62)
Escherichia coli [TaxId: 562]
(59)
1a
d2ipob1
B:1-100
1b
d2ipod1
D:1-100
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ATC-like
(129)
Superfamily
:
Aspartate/ornithine carbamoyltransferase
(122)
Family
:
Aspartate/ornithine carbamoyltransferase
(87)
Protein domain
:
Aspartate carbamoyltransferase catalytic subunit
(68)
Escherichia coli [TaxId: 562]
(62)
2a
d2ipoa1
A:1-150
2b
d2ipoa2
A:151-310
2c
d2ipoc1
C:1-150
2d
d2ipoc2
C:151-310
Class
:
Small proteins
(3458)
Fold
:
Rubredoxin-like
(572)
Superfamily
:
Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
(63)
Family
:
Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
(62)
Protein domain
:
Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
(62)
Escherichia coli [TaxId: 562]
(59)
3a
d2ipob2
B:101-153
3b
d2ipod2
D:101-153
[
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CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_2ipoB01 (B:8-100)
1b: CATH_2ipoD01 (D:8-100)
2a: CATH_2ipoA02 (A:134-291)
2b: CATH_2ipoC02 (C:134-291)
2c: CATH_2ipoA01 (A:1-133,A:292-310)
2d: CATH_2ipoC01 (C:1-133,C:292-310)
3a: CATH_2ipoB02 (B:101-153)
3b: CATH_2ipoD02 (D:101-153)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.140, no name defined]
(53)
Escherichia coli. Organism_taxid: 562.
(21)
1a
2ipoB01
B:8-100
1b
2ipoD01
D:8-100
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1370, no name defined]
(91)
Escherichia coli. Organism_taxid: 562.
(22)
2a
2ipoA02
A:134-291
2b
2ipoC02
C:134-291
2c
2ipoA01
A:1-133,A:292-310
2d
2ipoC01
C:1-133,C:292-310
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.20, no name defined]
(53)
Escherichia coli. Organism_taxid: 562.
(21)
3a
2ipoB02
B:101-153
3b
2ipoD02
D:101-153
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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