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2IO4
Asym. Unit
Info
Asym.Unit (169 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (81 KB)
Biol.Unit 3 (314 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PCNA12 DIMER FROM SULFOLOBUS SOLFATARICUS.
Authors
:
V. Hlinkova, H. Ling
Date
:
09 Oct 06 (Deposition) - 08 Apr 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (2x)
Keywords
:
Pcna12 Heterodimer, Protein-Protein Interaction, Pcna123 Heterotrimer, Dna Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Hlinkova, G. Xing, J. Bauer, Y. J. Shin, I. Dionne, K. R. Rajashankar S. D. Bell, H. Ling
Structures Of Monomeric, Dimeric And Trimeric Pcna: Pcna-Ring Assembly And Opening.
Acta Crystallogr. , Sect. D V. 64 941 2008
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
2c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
2d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
2e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
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No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
MPD
5
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:145 , ASP B:149 , ASP D:145 , ASP D:149 , HOH D:266
BINDING SITE FOR RESIDUE CA B 701
2
AC2
SOFTWARE
LYS A:44 , PRO A:228
BINDING SITE FOR RESIDUE MPD A 250
3
AC3
SOFTWARE
ASP B:142 , ASP B:145 , GLU B:146 , HOH B:751 , HOH B:752 , GLU D:146
BINDING SITE FOR RESIDUE MPD B 301
4
AC4
SOFTWARE
ASP B:21 , ASN B:204 , LYS B:207 , ASP D:21 , GLU D:200 , ASN D:204
BINDING SITE FOR RESIDUE MPD B 401
5
AC5
SOFTWARE
ARG B:44 , TYR B:240
BINDING SITE FOR RESIDUE MPD B 501
6
AC6
SOFTWARE
GLY B:151 , GLU B:152 , ILE B:168 , GLY B:169 , ASP B:170 , HOH B:712 , ARG D:210
BINDING SITE FOR RESIDUE MPD B 601
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PCNA_1 (B:34-57,D:34-57)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PCNA_1
PS01251
Proliferating cell nuclear antigen signature 1.
PCNA2_SULSO
33-56
2
B:34-57
D:34-57
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2io4b1 (B:1-127)
1b: SCOP_d2io4b2 (B:128-246)
1c: SCOP_d2io4d1 (D:1-127)
1d: SCOP_d2io4d2 (D:128-245)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
automated matches
(17)
Protein domain
:
automated matches
(17)
Sulfolobus solfataricus [TaxId: 273057]
(3)
1a
d2io4b1
B:1-127
1b
d2io4b2
B:128-246
1c
d2io4d1
D:1-127
1d
d2io4d2
D:128-245
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (169 KB)
Header - Asym.Unit
Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
Biol.Unit 2 (81 KB)
Header - Biol.Unit 2
Biol.Unit 3 (314 KB)
Header - Biol.Unit 3
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