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2IO2
Asym. Unit
Info
Asym.Unit (83 KB)
Biol.Unit 1 (299 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN SENP2 IN COMPLEX WITH RANGAP1-SUMO-1
Authors
:
D. Reverter, C. D. Lima
Date
:
09 Oct 06 (Deposition) - 21 Nov 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (4x)
Keywords
:
Sumo, Ubiquitin, Senp, Ulp, Complex, Protein Binding, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Reverter, C. D. Lima
Structural Basis For Senp2 Protease Interactions With Sumo Precursors And Conjugated Substrates.
Nat. Struct. Mol. Biol. V. 13 1060 2006
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ULP_PROTEASE (A:395-559)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ULP_PROTEASE
PS50600
Ubiquitin-like protease family profile.
SENP2_HUMAN
395-559
1
A:395-559
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Exons
(16, 16)
Info
All Exons
Exon 1.13b (A:365-370)
Exon 1.14b (A:371-414)
Exon 1.15a (A:415-482)
Exon 1.16 (A:483-509)
Exon 1.17 (A:509-537)
Exon 1.18b (A:538-569)
Exon 1.19c (A:570-589)
Exon 2.16b (C:432-460)
Exon 2.17b (C:461-495)
Exon 2.18 (C:495-524)
Exon 2.19 (C:525-565)
Exon 2.20c (C:565-587)
Exon 3.5 (B:23-29)
Exon 3.6b (B:30-55)
Exon 3.7b (B:56-79)
Exon 3.9j (B:80-97)
View:
Select:
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All Exon Boundaries
01: Boundary 1.12b/1.13b
02: Boundary 1.13b/1.14b
03: Boundary 1.14b/1.15a
04: Boundary 1.15a/1.16
05: Boundary 1.16/1.17
06: Boundary 1.17/1.18b
07: Boundary 1.18b/1.19c
08: Boundary 1.19c/-
09: Boundary 2.15/2.16b
10: Boundary 2.16b/2.17b
11: Boundary 2.17b/2.18
12: Boundary 2.18/2.19
13: Boundary 2.19/2.20c
14: Boundary 2.20c/-
15: Boundary 3.1a/3.5
16: Boundary 3.5/3.6b
17: Boundary 3.6b/3.7b
18: Boundary 3.7b/3.9j
19: Boundary 3.9j/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000296257
2a
ENSE00001875109
chr3:
185303962-185304302
341
SENP2_HUMAN
1-34
34
0
-
-
1.3
ENST00000296257
3
ENSE00001324023
chr3:
185307902-185307957
56
SENP2_HUMAN
34-53
20
0
-
-
1.4b
ENST00000296257
4b
ENSE00001308929
chr3:
185316200-185316333
134
SENP2_HUMAN
53-97
45
0
-
-
1.5a
ENST00000296257
5a
ENSE00001631097
chr3:
185316746-185316812
67
SENP2_HUMAN
98-120
23
0
-
-
1.6b
ENST00000296257
6b
ENSE00001756942
chr3:
185318553-185318643
91
SENP2_HUMAN
120-150
31
0
-
-
1.8c
ENST00000296257
8c
ENSE00001644564
chr3:
185324118-185324286
169
SENP2_HUMAN
150-206
57
0
-
-
1.9d
ENST00000296257
9d
ENSE00001632364
chr3:
185327035-185327138
104
SENP2_HUMAN
207-241
35
0
-
-
1.10b
ENST00000296257
10b
ENSE00001611859
chr3:
185329439-185329533
95
SENP2_HUMAN
241-273
33
0
-
-
1.11b
ENST00000296257
11b
ENSE00001697885
chr3:
185330395-185330446
52
SENP2_HUMAN
273-290
18
0
-
-
1.12b
ENST00000296257
12b
ENSE00001732674
chr3:
185331133-185331196
64
SENP2_HUMAN
290-311
22
0
-
-
1.13b
ENST00000296257
13b
ENSE00001602918
chr3:
185332352-185332528
177
SENP2_HUMAN
312-370
59
1
A:365-370
6
1.14b
ENST00000296257
14b
ENSE00001738954
chr3:
185335268-185335399
132
SENP2_HUMAN
371-414
44
1
A:371-414
44
1.15a
ENST00000296257
15a
ENSE00001645647
chr3:
185337087-185337290
204
SENP2_HUMAN
415-482
68
1
A:415-482
68
1.16
ENST00000296257
16
ENSE00001639235
chr3:
185339614-185339693
80
SENP2_HUMAN
483-509
27
1
A:483-509
27
1.17
ENST00000296257
17
ENSE00001806686
chr3:
185341786-185341870
85
SENP2_HUMAN
509-537
29
1
A:509-537
29
1.18b
ENST00000296257
18b
ENSE00001689492
chr3:
185344086-185344181
96
SENP2_HUMAN
538-569
32
1
A:538-569
32
1.19c
ENST00000296257
19c
ENSE00001887141
chr3:
185347570-185351339
3770
SENP2_HUMAN
570-589
20
1
A:570-589
20
2.3
ENST00000356244
3
ENSE00001525423
chr22:
41682255-41681990
266
RAGP1_HUMAN
-
0
0
-
-
2.6e
ENST00000356244
6e
ENSE00002184389
chr22:
41677086-41676937
150
RAGP1_HUMAN
1-38
38
0
-
-
2.7a
ENST00000356244
7a
ENSE00000655593
chr22:
41670731-41670604
128
RAGP1_HUMAN
38-80
43
0
-
-
2.8
ENST00000356244
8
ENSE00002178724
chr22:
41664160-41664101
60
RAGP1_HUMAN
81-100
20
0
-
-
2.9b
ENST00000356244
9b
ENSE00000655579
chr22:
41660847-41660668
180
RAGP1_HUMAN
101-160
60
0
-
-
2.10
ENST00000356244
10
ENSE00000655571
chr22:
41657584-41657450
135
RAGP1_HUMAN
161-205
45
0
-
-
2.11
ENST00000356244
11
ENSE00000655562
chr22:
41654110-41653952
159
RAGP1_HUMAN
206-258
53
0
-
-
2.12
ENST00000356244
12
ENSE00000655554
chr22:
41652828-41652715
114
RAGP1_HUMAN
259-296
38
0
-
-
2.13
ENST00000356244
13
ENSE00001388340
chr22:
41652294-41652195
100
RAGP1_HUMAN
297-330
34
0
-
-
2.14
ENST00000356244
14
ENSE00002167356
chr22:
41652109-41652025
85
RAGP1_HUMAN
330-358
29
0
-
-
2.15
ENST00000356244
15
ENSE00001615125
chr22:
41650498-41650312
187
RAGP1_HUMAN
358-420
63
0
-
-
2.16b
ENST00000356244
16b
ENSE00001786527
chr22:
41648995-41648876
120
RAGP1_HUMAN
421-460
40
1
C:432-460
29
2.17b
ENST00000356244
17b
ENSE00001635042
chr22:
41647113-41647011
103
RAGP1_HUMAN
461-495
35
1
C:461-495
35
2.18
ENST00000356244
18
ENSE00001708342
chr22:
41645821-41645733
89
RAGP1_HUMAN
495-524
30
1
C:495-524
30
2.19
ENST00000356244
19
ENSE00001792763
chr22:
41645455-41645334
122
RAGP1_HUMAN
525-565
41
1
C:525-565
41
2.20c
ENST00000356244
20c
ENSE00001563055
chr22:
41642676-41641615
1062
RAGP1_HUMAN
565-587
23
1
C:565-587
23
3.1a
ENST00000392246
1a
ENSE00001771214
chr2:
203103331-203103163
169
SUMO1_HUMAN
1-4
4
0
-
-
3.5
ENST00000392246
5
ENSE00001634753
chr2:
203084829-203084755
75
SUMO1_HUMAN
5-29
25
1
B:23-29
7
3.6b
ENST00000392246
6b
ENSE00001733147
chr2:
203079157-203079080
78
SUMO1_HUMAN
30-55
26
1
B:30-55
26
3.7b
ENST00000392246
7b
ENSE00001777388
chr2:
203075529-203075458
72
SUMO1_HUMAN
56-79
24
1
B:56-79
24
3.9j
ENST00000392246
9j
ENSE00001390654
chr2:
203072044-203070903
1142
SUMO1_HUMAN
80-101
22
1
B:80-97
18
[
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SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2io2c1 (C:432-587)
2a: SCOP_d2io2b_ (B:)
3a: SCOP_d2io2a_ (A:)
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Classes
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)
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Folds
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
(13)
Family
:
Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
(13)
Protein domain
:
Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
(10)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d2io2c1
C:432-587
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
SUMO-1 (smt3 homologue)
(12)
Human (Homo sapiens) [TaxId: 9606]
(8)
2a
d2io2b_
B:
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Adenain-like
(26)
Protein domain
:
Sentrin-specific protease 2, SENP2
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
3a
d2io2a_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2io2B00 (B:23-97)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Human (Homo sapiens)
(177)
1a
2io2B00
B:23-97
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Pfam Domains
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