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2ING
Biol. Unit 2
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Asym.Unit (36 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (59 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE BRCA1 BRCT MUTANT M1775K
Authors
:
G. Birrane, A. Soni, J. A. A. Ladias
Date
:
07 Oct 06 (Deposition) - 04 Sep 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.60
Chains
:
Asym. Unit : X
Biol. Unit 1: X (1x)
Biol. Unit 2: X (2x)
Keywords
:
Zinc-Finger, Dna-Binding, Dna Repair, Disease Mutation, Phosphorylation, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Tischkowitz, N. Hamel, M. A. Carvalho, G. Birrane, A. Soni, E. H. Van Beers, S. A. Joosse, N. Wong, D. Novak, L. A. Quenneville, S. A. Grist, P. M. Nederlof, D. E. Goldgar, S. V. Tavtigian, A. N. Monteiro, J. A. Ladias, W. D. Foulkes
Pathogenicity Of The Brca1 Missense Variant M1775K Is Determined By The Disruption Of The Brct Phosphopeptide-Binding Pocket: A Multi-Modal Approach.
Eur. J. Hum. Genet. V. 16 820 2008
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO
-1
Ligand/Ion
COBALT (II) ION
2
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS X:1673 , HIS X:1805
BINDING SITE FOR RESIDUE CO X 101
2
AC2
SOFTWARE
SER X:1655 , GLY X:1656 , THR X:1700 , LYS X:1702
BINDING SITE FOR RESIDUE SO4 X 1
3
AC3
SOFTWARE
THR X:1677 , ASN X:1678 , LEU X:1679
BINDING SITE FOR RESIDUE SO4 X 2
[
close Site info
]
SAPs(SNPs)/Variants
(48, 96)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_070494 (S1651F, chain X, )
02: VAR_070495 (S1651P, chain X, )
03: VAR_007795 (M1652I, chain X, )
04: VAR_070496 (S1655F, chain X, )
05: VAR_052080 (F1662C, chain X, )
06: VAR_020700 (V1665M, chain X, )
07: VAR_063902 (T1685A, chain X, )
08: VAR_063903 (T1685I, chain X, )
09: VAR_070497 (H1686Q, chain X, )
10: VAR_070498 (H1686R, chain X, )
11: VAR_063904 (M1689R, chain X, )
12: VAR_020701 (K1690Q, chain X, )
13: VAR_070500 (T1691I, chain X, )
14: VAR_008763 (D1692N, chain X, )
15: VAR_020702 (C1697R, chain X, )
16: VAR_070501 (R1699Q, chain X, )
17: VAR_020703 (R1699W, chain X, )
18: VAR_070502 (G1706A, chain X, )
19: VAR_063905 (G1706E, chain X, )
20: VAR_007796 (A1708E, chain X, )
21: VAR_007797 (V1713G, chain X, )
22: VAR_063906 (S1715R, chain X, )
23: VAR_070503 (W1718C, chain X, )
24: VAR_070504 (T1720A, chain X, )
25: VAR_070505 (E1735K, chain X, )
26: VAR_070506 (V1736A, chain X, )
27: VAR_063907 (G1738R, chain X, )
28: VAR_070507 (D1739G, chain X, )
29: VAR_070508 (D1739V, chain X, )
30: VAR_070509 (H1746Q, chain X, )
31: VAR_007798 (P1749R, chain X, )
32: VAR_070510 (R1753T, chain X, )
33: VAR_063908 (L1764P, chain X, )
34: VAR_063909 (I1766S, chain X, )
35: VAR_070511 (C1767S, chain X, )
36: VAR_070512 (G1770V, chain X, )
37: VAR_063212 (K1775K, chain X, )
38: VAR_007799 (K1775R, chain X, )
39: VAR_008764 (P1776S, chain X, )
40: VAR_070513 (W1782C, chain X, )
41: VAR_020704 (L1786P, chain X, )
42: VAR_063910 (G1788V, chain X, )
43: VAR_070514 (A1789T, chain X, )
44: VAR_070515 (E1794D, chain X, )
45: VAR_070516 (V1804D, chain X, )
46: VAR_070517 (P1812R, chain X, )
47: VAR_008765 (P1812S, chain X, )
48: VAR_070518 (W1837R, chain X, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_070494
S
1651
F
BRCA1_HUMAN
Unclassified
---
X
S
1651
F
02
UniProt
VAR_070495
S
1651
P
BRCA1_HUMAN
Unclassified
---
X
S
1651
P
03
UniProt
VAR_007795
M
1652
I
BRCA1_HUMAN
Polymorphism
1799967
X
M
1652
I
04
UniProt
VAR_070496
S
1655
F
BRCA1_HUMAN
Unclassified
---
X
S
1655
F
05
UniProt
VAR_052080
F
1662
C
BRCA1_HUMAN
Polymorphism
28897695
X
F
1662
C
06
UniProt
VAR_020700
V
1665
M
BRCA1_HUMAN
Polymorphism
---
X
V
1665
M
07
UniProt
VAR_063902
T
1685
A
BRCA1_HUMAN
Unclassified
---
X
T
1685
A
08
UniProt
VAR_063903
T
1685
I
BRCA1_HUMAN
Unclassified
---
X
T
1685
I
09
UniProt
VAR_070497
H
1686
Q
BRCA1_HUMAN
Unclassified
---
X
H
1686
Q
10
UniProt
VAR_070498
H
1686
R
BRCA1_HUMAN
Unclassified
---
X
H
1686
R
11
UniProt
VAR_063904
M
1689
R
BRCA1_HUMAN
Unclassified
---
X
M
1689
R
12
UniProt
VAR_020701
K
1690
Q
BRCA1_HUMAN
Unclassified
---
X
K
1690
Q
13
UniProt
VAR_070500
T
1691
I
BRCA1_HUMAN
Unclassified
---
X
T
1691
I
14
UniProt
VAR_008763
D
1692
N
BRCA1_HUMAN
Unclassified
---
X
D
1692
N
15
UniProt
VAR_020702
C
1697
R
BRCA1_HUMAN
Disease (OC)
---
X
C
1697
R
16
UniProt
VAR_070501
R
1699
Q
BRCA1_HUMAN
Unclassified
---
X
R
1699
Q
17
UniProt
VAR_020703
R
1699
W
BRCA1_HUMAN
Disease (OC)
---
X
R
1699
W
18
UniProt
VAR_070502
G
1706
A
BRCA1_HUMAN
Unclassified
---
X
G
1706
A
19
UniProt
VAR_063905
G
1706
E
BRCA1_HUMAN
Unclassified
80356860
X
G
1706
E
20
UniProt
VAR_007796
A
1708
E
BRCA1_HUMAN
Disease (BC)
28897696
X
A
1708
E
21
UniProt
VAR_007797
V
1713
G
BRCA1_HUMAN
Polymorphism
---
X
V
1713
G
22
UniProt
VAR_063906
S
1715
R
BRCA1_HUMAN
Unclassified
---
X
S
1715
R
23
UniProt
VAR_070503
W
1718
C
BRCA1_HUMAN
Unclassified
---
X
W
1718
C
24
UniProt
VAR_070504
T
1720
A
BRCA1_HUMAN
Unclassified
---
X
T
1720
A
25
UniProt
VAR_070505
E
1735
K
BRCA1_HUMAN
Unclassified
---
X
E
1735
K
26
UniProt
VAR_070506
V
1736
A
BRCA1_HUMAN
Unclassified
---
X
V
1736
A
27
UniProt
VAR_063907
G
1738
R
BRCA1_HUMAN
Unclassified
---
X
G
1738
R
28
UniProt
VAR_070507
D
1739
G
BRCA1_HUMAN
Unclassified
---
X
D
1739
G
29
UniProt
VAR_070508
D
1739
V
BRCA1_HUMAN
Unclassified
---
X
D
1739
V
30
UniProt
VAR_070509
H
1746
Q
BRCA1_HUMAN
Unclassified
---
X
H
1746
Q
31
UniProt
VAR_007798
P
1749
R
BRCA1_HUMAN
Unclassified
---
X
P
1749
R
32
UniProt
VAR_070510
R
1753
T
BRCA1_HUMAN
Unclassified
---
X
R
1753
T
33
UniProt
VAR_063908
L
1764
P
BRCA1_HUMAN
Unclassified
---
X
L
1764
P
34
UniProt
VAR_063909
I
1766
S
BRCA1_HUMAN
Unclassified
---
X
I
1766
S
35
UniProt
VAR_070511
C
1767
S
BRCA1_HUMAN
Unclassified
---
X
C
1767
S
36
UniProt
VAR_070512
G
1770
V
BRCA1_HUMAN
Unclassified
---
X
G
1770
V
37
UniProt
VAR_063212
M
1775
K
BRCA1_HUMAN
Disease (BC)
---
X
K
1775
K
38
UniProt
VAR_007799
M
1775
R
BRCA1_HUMAN
Disease (BC)
---
X
K
1775
R
39
UniProt
VAR_008764
P
1776
S
BRCA1_HUMAN
Unclassified
1800757
X
P
1776
S
40
UniProt
VAR_070513
W
1782
C
BRCA1_HUMAN
Unclassified
---
X
W
1782
C
41
UniProt
VAR_020704
L
1786
P
BRCA1_HUMAN
Unclassified
---
X
L
1786
P
42
UniProt
VAR_063910
G
1788
V
BRCA1_HUMAN
Unclassified
---
X
G
1788
V
43
UniProt
VAR_070514
A
1789
T
BRCA1_HUMAN
Unclassified
---
X
A
1789
T
44
UniProt
VAR_070515
E
1794
D
BRCA1_HUMAN
Unclassified
---
X
E
1794
D
45
UniProt
VAR_070516
V
1804
D
BRCA1_HUMAN
Unclassified
---
X
V
1804
D
46
UniProt
VAR_070517
P
1812
R
BRCA1_HUMAN
Unclassified
---
X
P
1812
R
47
UniProt
VAR_008765
P
1812
S
BRCA1_HUMAN
Unclassified
1800751
X
P
1812
S
48
UniProt
VAR_070518
W
1837
R
BRCA1_HUMAN
Unclassified
---
X
W
1837
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: BRCT (X:1756-1855)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BRCT
PS50172
BRCT domain profile.
BRCA1_HUMAN
1642-1736
1756-1855
2
-
X:1756-1855
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ingx1 (X:1650-1756)
1b: SCOP_d2ingx2 (X:1760-1855)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
BRCT domain
(29)
Superfamily
:
BRCT domain
(29)
Family
:
BRCT domain
(15)
Protein domain
:
Breast cancer associated protein, BRCA1
(15)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d2ingx1
X:1650-1756
1b
d2ingx2
X:1760-1855
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2ingX02 (X:1756-1859)
1b: CATH_2ingX01 (X:1649-1755)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.10190, no name defined]
(24)
Human (Homo sapiens)
(22)
1a
2ingX02
X:1756-1859
1b
2ingX01
X:1649-1755
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
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