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2IND
Asym. Unit
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Asym.Unit (157 KB)
Biol.Unit 1 (301 KB)
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(1)
Title
:
MN(II) RECONSTITUTED TOLUENE/O-XYLENE MONOOXYGENASE HYDROXYLASE X-RAY CRYSTAL STRUCTURE
Authors
:
M. S. Mccormick, M. H. Sazinsky, K. L. Condon, S. J. Lippard
Date
:
06 Oct 06 (Deposition) - 05 Dec 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Manganese Reconstitution, 4-Helix Bundle, Carboxylate Bridge, Metalloenzyme, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. S. Mccormick, M. H. Sazinsky, K. L. Condon, S. J. Lippard
X-Ray Crystal Structures Of Manganese(Ii)-Reconstituted And Native Toluene/O-Xylene Monooxygenase Hydroxylase Reveal Rotamer Shifts In Conserved Residues And An Enhanced View Of The Protein Interior.
J. Am. Chem. Soc. V. 128 15108 2006
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
2a: HEXAETHYLENE GLYCOL (P6Ga)
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Label:
No.
Name
Count
Type
Full Name
1
MN
2
Ligand/Ion
MANGANESE (II) ION
2
P6G
1
Ligand/Ion
HEXAETHYLENE GLYCOL
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:134 , GLU A:197 , GLU A:231 , HIS A:234 , MN A:502 , HOH A:504
BINDING SITE FOR RESIDUE MN A 501
2
AC2
SOFTWARE
GLU A:104 , GLU A:134 , HIS A:137 , GLU A:231 , MN A:501 , HOH A:504 , HOH A:505
BINDING SITE FOR RESIDUE MN A 502
3
AC3
SOFTWARE
ILE A:100 , GLU A:104 , PHE A:196 , THR A:201 , GLN A:204 , GLY A:207 , LEU A:208 , ASP A:211 , LEU A:272 , THR A:273 , MET A:277 , HOH A:504
BINDING SITE FOR RESIDUE P6G A 503
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2inda_ (A:)
2a: SCOP_d2indb_ (B:)
3a: SCOP_d2indc_ (C:)
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ribonucleotide reductase-like
(185)
Protein domain
:
Toluene, o-xylene monooxygenase oxygenase subunit TouA
(17)
Pseudomonas stutzeri [TaxId: 316]
(6)
1a
d2inda_
A:
Protein domain
:
Toluene, o-xylene monooxygenase oxygenase subunit TouE
(17)
Pseudomonas stutzeri [TaxId: 316]
(6)
2a
d2indb_
B:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
TmoB-like
(31)
Family
:
TmoB-like
(17)
Protein domain
:
Toluene, o-xylene monooxygenase oxygenase subunit TouB
(17)
Pseudomonas stutzeri [TaxId: 316]
(6)
3a
d2indc_
C:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2indC00 (C:3-85)
2a: CATH_2indB00 (B:8-330)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
TmoB-like (Pfam 06234). Chain C
(13)
Pseudomonas stutzeri. Organism_taxid: 316. Strain: ox1.
(3)
1a
2indC00
C:3-85
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Ribonucleotide Reductase, subunit A
(86)
Homologous Superfamily
:
Ribonucleotide Reductase, subunit A
(86)
Pseudomonas stutzeri. Organism_taxid: 316. Strain: ox1.
(3)
2a
2indB00
B:8-330
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Pfam Domains
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Asym.Unit (157 KB)
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