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2IM2
Asym. Unit
Info
Asym.Unit (88 KB)
Biol.Unit 1 (83 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF POLIOVIRUS POLYMERASE COMPLEXED WITH UTP AND MG2+
Authors
:
A. A. Thompson, O. B. Peersen
Date
:
03 Oct 06 (Deposition) - 12 Dec 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Nucleotidyltransferase, Poliovirus, 3D, Rna-Dependent, Polymerase, Utp, Stabilization, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Thompson, R. A. Albertini, O. B. Peersen
Stabilization Of Poliovirus Polymerase By Ntp Binding And Fingers-Thumb Interactions.
J. Mol. Biol. V. 366 1459 2007
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
2a: S-(DIMETHYLARSENIC)CYSTEINE (CASa)
2b: S-(DIMETHYLARSENIC)CYSTEINE (CASb)
2c: S-(DIMETHYLARSENIC)CYSTEINE (CASc)
2d: S-(DIMETHYLARSENIC)CYSTEINE (CASd)
3a: SODIUM ION (NAa)
4a: URIDINE 5'-TRIPHOSPHATE (UTPa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACY
4
Ligand/Ion
ACETIC ACID
2
CAS
4
Mod. Amino Acid
S-(DIMETHYLARSENIC)CYSTEINE
3
NA
1
Ligand/Ion
SODIUM ION
4
UTP
1
Ligand/Ion
URIDINE 5'-TRIPHOSPHATE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:268 , ASN A:269 , SER A:271 , GLY A:284 , GLY A:285 , HOH A:669
BINDING SITE FOR RESIDUE NA A 3001
2
AC2
SOFTWARE
ARG A:163 , LYS A:167 , ARG A:174 , LEU A:175 , ILE A:176 , TYR A:234 , THR A:235 , GLY A:236 , TYR A:237 , ASP A:238 , SER A:288 , HOH A:548 , HOH A:606 , HOH A:656 , HOH A:672 , HOH A:677 , HOH A:678 , HOH A:696 , HOH A:726
BINDING SITE FOR RESIDUE UTP A 1001
3
AC3
SOFTWARE
ILE A:401 , TRP A:403 , THR A:404 , THR A:410 , HIS A:413 , HOH A:633
BINDING SITE FOR RESIDUE ACY A 901
4
AC4
SOFTWARE
ASP A:71 , TYR A:350
BINDING SITE FOR RESIDUE ACY A 902
5
AC5
SOFTWARE
LYS A:375 , HOH A:686
BINDING SITE FOR RESIDUE ACY A 903
6
AC6
SOFTWARE
TYR A:334 , HIS A:336 , PRO A:440 , ARG A:443 , HOH A:579
BINDING SITE FOR RESIDUE ACY A 904
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RDRP_SSRNA_POS (A:227-342)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RDRP_SSRNA_POS
PS50507
RdRp of positive ssRNA viruses catalytic domain profile.
POLG_POL1M
1975-2090
1
A:227-342
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2im2a_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
Viral RNA polymerase
(148)
Human poliovirus 1 [TaxId: 12081]
(7)
1a
d2im2a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (88 KB)
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