PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2ILR
Asym. Unit
Info
Asym.Unit (46 KB)
Biol.Unit 1 (42 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN FANCONI ANEMIA PROTEIN E C-TERMINAL DOMAIN
Authors
:
L. Pellegrini, R. K. Nookala
Date
:
03 Oct 06 (Deposition) - 27 Feb 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Antiparallel Helical Hairpin, Helical Repeat, Fanc Repeat, Oncoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. K. Nookala, S. Hussain, L. Pellegrini
Insights Into Fanconi Anaemia From The Structure Of Human Fance
Nucleic Acids Res. V. 35 1638 2007
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_023374 (G340R, chain A, )
2: VAR_023375 (R343Q, chain A, )
3: VAR_023376 (A502T, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_023374
G
340
R
FANCE_HUMAN
Polymorphism
45524646
A
G
340
R
2
UniProt
VAR_023375
R
343
Q
FANCE_HUMAN
Polymorphism
45467798
A
R
343
Q
3
UniProt
VAR_023376
A
502
T
FANCE_HUMAN
Polymorphism
9462088
A
A
502
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(9, 9)
Info
All Exons
Exon 1.2 (A:275-285)
Exon 1.3 (A:286-300)
Exon 1.4 (A:308-323)
Exon 1.5 (A:324-371)
Exon 1.6 (A:372-413)
Exon 1.7 (A:413-439)
Exon 1.8 (A:439-461)
Exon 1.9 (A:462-503 (gaps))
Exon 1.10 (A:504-535)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000229769
1
ENSE00000849631
chr6:
35420138-35420570
433
FANCE_HUMAN
1-83
83
0
-
-
1.2
ENST00000229769
2
ENSE00000849632
chr6:
35423524-35424130
607
FANCE_HUMAN
83-285
203
1
A:275-285
11
1.3
ENST00000229769
3
ENSE00000849633
chr6:
35425333-35425377
45
FANCE_HUMAN
286-300
15
1
A:286-300
15
1.4
ENST00000229769
4
ENSE00000747051
chr6:
35425693-35425761
69
FANCE_HUMAN
301-323
23
1
A:308-323
16
1.5
ENST00000229769
5
ENSE00000849634
chr6:
35426074-35426217
144
FANCE_HUMAN
324-371
48
1
A:324-371
48
1.6
ENST00000229769
6
ENSE00000849635
chr6:
35427108-35427231
124
FANCE_HUMAN
372-413
42
1
A:372-413
42
1.7
ENST00000229769
7
ENSE00000849636
chr6:
35427459-35427537
79
FANCE_HUMAN
413-439
27
1
A:413-439
27
1.8
ENST00000229769
8
ENSE00000849637
chr6:
35428329-35428395
67
FANCE_HUMAN
439-461
23
1
A:439-461
23
1.9
ENST00000229769
9
ENSE00000849638
chr6:
35430566-35430691
126
FANCE_HUMAN
462-503
42
1
A:462-503 (gaps)
42
1.10
ENST00000229769
10
ENSE00001032057
chr6:
35434021-35434880
860
FANCE_HUMAN
504-536
33
1
A:504-535
32
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (46 KB)
Header - Asym.Unit
Biol.Unit 1 (42 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2ILR
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
