PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2IK8
Asym. Unit
Info
Asym.Unit (144 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (71 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE HETERODIMERIC COMPLEX OF HUMAN RGS16 AND ACTIVATED GI ALPHA 1
Authors
:
M. Soundararajan, A. P. Turnbull, E. Papagrigoriou, J. Debreczeni, F. F. Von Delft, J. Weigelt, A. Edwards, C. Arrowsmith, M. Sundstrom, D. Structural Genomics Consortium (Sgc)
Date
:
02 Oct 06 (Deposition) - 21 Nov 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.71
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
G Protein Signalling, Rgs, Heterotrimeric G Protein, Signalling Complex, Structural Genomics, Structural Genomics Consortium, Sgc, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Soundararajan, F. S. Willard, A. J. Kimple, A. P. Turnbull, L. J. Ball, G. A. Schoch, C. Gileadi, O. Y. Fedorov, E. F. Dowler, V. A. Higman, S. Q. Hutsell, M. Sundstrom, D. A. Doyle, D. P. Siderovski
Structural Diversity In The Rgs Domain And Its Interaction With Heterotrimeric G Protein Alpha-Subunits.
Proc. Natl. Acad. Sci. Usa V. 105 6457 2008
[
close entry info
]
Hetero Components
(4, 14)
Info
All Hetero Components
1a: TETRAFLUOROALUMINATE ION (ALFa)
1b: TETRAFLUOROALUMINATE ION (ALFb)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ALF
2
Ligand/Ion
TETRAFLUOROALUMINATE ION
2
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
SO4
8
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:42 , GLU A:43 , LYS A:46 , ARG A:178 , LYS A:180 , THR A:181 , VAL A:201 , GLY A:203 , GLN A:204 , MG A:356 , GDP A:401 , HOH A:408 , HOH A:416 , HOH A:417
BINDING SITE FOR RESIDUE ALF A 355
02
AC2
SOFTWARE
GLY C:42 , GLU C:43 , LYS C:46 , SER C:47 , ARG C:178 , VAL C:179 , LYS C:180 , THR C:181 , GLY C:203 , GLN C:204 , MG C:356 , GDP C:402 , HOH C:405 , HOH C:407 , HOH C:413
BINDING SITE FOR RESIDUE ALF C 355
03
AC3
SOFTWARE
SER A:47 , THR A:181 , ALF A:355 , GDP A:401 , HOH A:408 , HOH A:417
BINDING SITE FOR RESIDUE MG A 356
04
AC4
SOFTWARE
SER C:47 , THR C:181 , ALF C:355 , GDP C:402 , HOH C:405 , HOH C:413
BINDING SITE FOR RESIDUE MG C 356
05
AC5
SOFTWARE
ILE A:93 , ASP A:94 , GLU C:297
BINDING SITE FOR RESIDUE SO4 C 357
06
AC6
SOFTWARE
ILE B:104 , ARG B:105 , SER B:106
BINDING SITE FOR RESIDUE SO4 B 302
07
AC7
SOFTWARE
LYS D:103 , ILE D:104 , ARG D:105 , SER D:106
BINDING SITE FOR RESIDUE SO4 D 303
08
AC8
SOFTWARE
ARG A:105 , HIS C:322 , PHE C:323
BINDING SITE FOR RESIDUE SO4 A 357
09
AC9
SOFTWARE
SER A:293 , ASN A:294 , ARG C:90
BINDING SITE FOR RESIDUE SO4 A 358
10
BC1
SOFTWARE
LYS A:35 , PHE A:199
BINDING SITE FOR RESIDUE SO4 A 359
11
BC2
SOFTWARE
GLN C:106
BINDING SITE FOR RESIDUE SO4 C 358
12
BC3
SOFTWARE
HIS A:213 , GLY C:217
BINDING SITE FOR RESIDUE SO4 A 360
13
BC4
SOFTWARE
GLU A:43 , SER A:44 , GLY A:45 , LYS A:46 , SER A:47 , THR A:48 , SER A:151 , LEU A:175 , ARG A:176 , THR A:177 , ARG A:178 , ASN A:269 , LYS A:270 , ASP A:272 , CYS A:325 , ALA A:326 , THR A:327 , ALF A:355 , MG A:356 , HOH A:405 , HOH A:408 , HOH A:417
BINDING SITE FOR RESIDUE GDP A 401
14
BC5
SOFTWARE
GLU C:43 , SER C:44 , GLY C:45 , LYS C:46 , SER C:47 , THR C:48 , ASP C:150 , SER C:151 , LEU C:175 , ARG C:176 , THR C:177 , ARG C:178 , ASN C:269 , LYS C:270 , ASP C:272 , LEU C:273 , CYS C:325 , ALA C:326 , THR C:327 , ALF C:355 , MG C:356 , HOH C:405 , HOH C:413
BINDING SITE FOR RESIDUE GDP C 402
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_046528 (R137R, chain B/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_046528
H
137
R
RGS16_HUMAN
Polymorphism
1144566
B/D
R
137
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RGS (B:65-181,D:65-181)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RGS
PS50132
RGS domain profile.
RGS16_HUMAN
65-181
2
B:65-181
D:65-181
[
close PROSITE info
]
Exons
(11, 22)
Info
All Exons
Exon 1.4a (A:32-40 | C:33-40)
Exon 1.8 (A:40-54 | C:40-54)
Exon 1.9b (A:54-101 | C:54-101)
Exon 1.10 (A:102-154 (gaps) | C:102-154 (gaps...)
Exon 1.11 (A:154-197 | C:154-197)
Exon 1.12 (A:197-240 | C:197-240)
Exon 1.13 (A:241-292 | C:241-292)
Exon 1.14b (A:292-348 | C:292-348)
Exon 2.3 (B:65-74 | D:55-74)
Exon 2.4 (B:74-129 | D:74-129)
Exon 2.5 (B:130-184 | D:130-184)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.4a
02: Boundary 1.4a/1.8
03: Boundary 1.8/1.9b
04: Boundary 1.9b/1.10
05: Boundary 1.10/1.11
06: Boundary 1.11/1.12
07: Boundary 1.12/1.13
08: Boundary 1.13/1.14b
09: Boundary 1.14b/-
10: Boundary 2.2/2.3
11: Boundary 2.3/2.4
12: Boundary 2.4/2.5
13: Boundary 2.5/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000351004
4a
ENSE00001371927
chr7:
79764104-79764594
491
GNAI1_HUMAN
1-40
40
2
A:32-40
C:33-40
9
8
1.8
ENST00000351004
8
ENSE00001626524
chr7:
79818267-79818309
43
GNAI1_HUMAN
40-54
15
2
A:40-54
C:40-54
15
15
1.9b
ENST00000351004
9b
ENSE00001129655
chr7:
79818406-79818547
142
GNAI1_HUMAN
54-101
48
2
A:54-101
C:54-101
48
48
1.10
ENST00000351004
10
ENSE00000877050
chr7:
79828541-79828698
158
GNAI1_HUMAN
102-154
53
2
A:102-154 (gaps)
C:102-154 (gaps)
53
53
1.11
ENST00000351004
11
ENSE00002174891
chr7:
79833020-79833148
129
GNAI1_HUMAN
154-197
44
2
A:154-197
C:154-197
44
44
1.12
ENST00000351004
12
ENSE00001369917
chr7:
79840285-79840414
130
GNAI1_HUMAN
197-240
44
2
A:197-240
C:197-240
44
44
1.13
ENST00000351004
13
ENSE00001591517
chr7:
79842032-79842185
154
GNAI1_HUMAN
241-292
52
2
A:241-292
C:241-292
52
52
1.14b
ENST00000351004
14b
ENSE00001303419
chr7:
79846619-79848718
2100
GNAI1_HUMAN
292-354
63
2
A:292-348
C:292-348
57
57
2.1
ENST00000367558
1
ENSE00001445026
chr1:
182573543-182573351
193
RGS16_HUMAN
1-15
15
0
-
-
2.2
ENST00000367558
2
ENSE00000959323
chr1:
182572474-182572364
111
RGS16_HUMAN
15-52
38
0
-
-
2.3
ENST00000367558
3
ENSE00000959324
chr1:
182571619-182571555
65
RGS16_HUMAN
52-74
23
2
B:65-74
D:55-74
10
20
2.4
ENST00000367558
4
ENSE00000959303
chr1:
182571267-182571101
167
RGS16_HUMAN
74-129
56
2
B:74-129
D:74-129
56
56
2.5
ENST00000367558
5
ENSE00001445025
chr1:
182569648-182567758
1891
RGS16_HUMAN
130-202
73
2
B:130-184
D:130-184
55
55
[
close EXON info
]
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2ik8b1 (B:65-180)
1b: SCOP_d2ik8d_ (D:)
2a: SCOP_d2ik8a1 (A:61-181)
2b: SCOP_d2ik8c1 (C:61-181)
3a: SCOP_d2ik8a2 (A:32-60,A:182-348)
3b: SCOP_d2ik8c2 (C:33-60,C:182-348)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Regulator of G-protein signaling, RGS
(52)
Superfamily
:
Regulator of G-protein signaling, RGS
(52)
Family
:
Regulator of G-protein signaling, RGS
(27)
Protein domain
:
Regulator of G-protein signaling 16, RGS16
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2ik8b1
B:65-180
1b
d2ik8d_
D:
Fold
:
Transducin (alpha subunit), insertion domain
(49)
Superfamily
:
Transducin (alpha subunit), insertion domain
(49)
Family
:
Transducin (alpha subunit), insertion domain
(49)
Protein domain
:
Transducin (alpha subunit), insertion domain
(49)
Human (Homo sapiens) [TaxId: 9606]
(7)
2a
d2ik8a1
A:61-181
2b
d2ik8c1
C:61-181
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Transducin (alpha subunit)
(51)
Human (Homo sapiens) [TaxId: 9606]
(7)
3a
d2ik8a2
A:32-60,A:182-348
3b
d2ik8c2
C:33-60,C:182-348
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2ik8A01 (A:34-61,A:181-343)
1b: CATH_2ik8C01 (C:34-61,C:181-343)
2a: CATH_2ik8A02 (A:62-180)
2b: CATH_2ik8C02 (C:62-180)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2ik8A01
A:34-61,A:181-343
1b
2ik8C01
C:34-61,C:181-343
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GI Alpha 1, domain 2-like
(67)
Homologous Superfamily
:
GI Alpha 1, domain 2-like
(66)
Human (Homo sapiens)
(13)
2a
2ik8A02
A:62-180
2b
2ik8C02
C:62-180
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (144 KB)
Header - Asym.Unit
Biol.Unit 1 (70 KB)
Header - Biol.Unit 1
Biol.Unit 2 (71 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2IK8
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help