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2IJD
Biol. Unit 1
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Asym.Unit (213 KB)
Biol.Unit 1 (207 KB)
Biol.Unit 2 (207 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE POLIOVIRUS PRECURSOR PROTEIN 3CD
Authors
:
L. L. Marcotte, D. W. Gohara, D. J. Filman, J. M. Hogle
Date
:
29 Sep 06 (Deposition) - 13 Feb 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.40
Chains
:
Asym. Unit : 1,2
Biol. Unit 1: 1 (2x)
Biol. Unit 2: 2 (2x)
Keywords
:
Rna Polymerase, Rna-Dependent Rna Polymerase, Poliovirus, Picornavirus, Protease, Hydrolase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. L. Marcotte, A. B. Wass, D. W. Gohara, H. B. Pathak, J. J. Arnold, D. J. Filman, C. E. Cameron, J. M. Hogle
Crystal Structure Of Poliovirus 3Cd: Virally-Encoded Protease And Precursor To The Rna-Dependent Rna Polymerase.
J. Virol. V. 81 3583 2007
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
SO4
8
Ligand/Ion
SULFATE ION
2
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC8 (SOFTWARE)
5: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP 1:446 , HIS 1:453 , HIS 1:455 , CYS 1:464
BINDING SITE FOR RESIDUE ZN 1 645
2
AC3
SOFTWARE
GLN 1:65 , ARG 1:134
BINDING SITE FOR RESIDUE SO4 1 646
3
AC5
SOFTWARE
LYS 1:350
BINDING SITE FOR RESIDUE SO4 1 647
4
AC8
SOFTWARE
SER 1:347 , LYS 1:350 , LYS 1:542
BINDING SITE FOR RESIDUE SO4 1 648
5
BC1
SOFTWARE
ARG 1:598 , PRO 1:631 , ARG 1:639
BINDING SITE FOR RESIDUE SO4 1 649
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RDRP_SSRNA_POS
PS50507
RdRp of positive ssRNA viruses catalytic domain profile.
POLG_POL1M
1975-2090
2
1:410-525
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2ijd11 (1:1-180)
1b: SCOP_d2ijd21 (2:1-180)
2a: SCOP_d2ijd12 (1:184-644)
2b: SCOP_d2ijd22 (2:184-644)
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)
Protein Domains
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)
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Viral cysteine protease of trypsin fold
(145)
Protein domain
:
3C cysteine protease (picornain 3C)
(22)
Human poliovirus 1 Mahoney [TaxId: 12081]
(2)
1a
d2ijd11
1:1-180
1b
d2ijd21
2:1-180
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
Viral RNA polymerase
(148)
Poliovirus type 1, strain Mahoney [TaxId: 12080]
(12)
2a
d2ijd12
1:184-644
2b
d2ijd22
2:184-644
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (213 KB)
Header - Asym.Unit
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