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Getting 'Exon' information from database.
2IIK
Asym. Unit
Info
Asym.Unit (122 KB)
Biol.Unit 1 (116 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PEROXISOMAL ACETYL-COA ACYL TRANSFERASE 1 (ACAA1)
Authors
:
E. Papagrigoriou, C. Johansson, C. Smee, K. Kavanagh, A. C. W. Pike, M. S J. Weigelt, A. Edwards, C. H. Arrowsmith, O. Gileadi, F. Gorrec, C. Ume Delft, U. Oppermann, Structural Genomics Consortium (Sgc)
Date
:
28 Sep 06 (Deposition) - 10 Oct 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Fatty Acid Metabolism, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Papagrigoriou, C. Johansson, C. Smee, K. Kavanagh, A. C. W. Pike, M. Sundstrom, J. Weigelt, A. Edwards, C. H. Arrowsmith, O. Gileadi, F. Gorrec, C. Umeano, F. Von Delft, U. Oppermann, Structural Genomics Consortium (Sgc)
Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl Transferase 1 (Acaa1)
To Be Published
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_011904 (E173D, chain A/B, )
2: VAR_069148 (V388A, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011904
E
172
D
THIK_HUMAN
Polymorphism
156265
A/B
E
173
D
2
UniProt
VAR_069148
V
387
A
THIK_HUMAN
Polymorphism
2229528
A/B
V
388
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: THIOLASE_1 (A:119-137,B:119-137)
2: THIOLASE_2 (A:368-384,B:368-384)
3: THIOLASE_3 (A:404-417,B:404-417)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOLASE_1
PS00098
Thiolases acyl-enzyme intermediate signature.
THIK_HUMAN
119-137
2
A:119-137
B:119-137
2
THIOLASE_2
PS00737
Thiolases signature 2.
THIK_HUMAN
367-383
2
A:368-384
B:368-384
3
THIOLASE_3
PS00099
Thiolases active site.
THIK_HUMAN
403-416
2
A:404-417
B:404-417
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Exons
(12, 24)
Info
All Exons
Exon 1.1b (A:33-57 | B:21-57)
Exon 1.2a (A:58-89 | B:58-89)
Exon 1.4d (A:89-108 | B:89-108)
Exon 1.6b (A:108-135 | B:108-135)
Exon 1.7 (A:135-149 | B:135-149)
Exon 1.8b (A:149-183 (gaps) | B:149-183 (gaps...)
Exon 1.9a (A:183-210 | B:183-210)
Exon 1.10a (A:210-274 | B:210-274)
Exon 1.10h (A:274-334 | B:274-334)
Exon 1.10i (A:334-352 | B:334-352)
Exon 1.11a (A:353-401 | B:353-401)
Exon 1.11i (A:401-423 | B:401-425)
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All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.2a
03: Boundary 1.2a/1.4d
04: Boundary 1.4d/1.6b
05: Boundary 1.6b/1.7
06: Boundary 1.7/1.8b
07: Boundary 1.8b/1.9a
08: Boundary 1.9a/1.10a
09: Boundary 1.10a/1.10h
10: Boundary 1.10h/1.10i
11: Boundary 1.10i/1.11a
12: Boundary 1.11a/1.11i
13: Boundary 1.11i/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000333167
1b
ENSE00001927555
chr3:
38178699-38178356
344
THIK_HUMAN
1-57
57
2
A:33-57
B:21-57
25
37
1.2a
ENST00000333167
2a
ENSE00001317086
chr3:
38178176-38178083
94
THIK_HUMAN
58-89
32
2
A:58-89
B:58-89
32
32
1.4d
ENST00000333167
4d
ENSE00001705640
chr3:
38175500-38175443
58
THIK_HUMAN
89-108
20
2
A:89-108
B:89-108
20
20
1.6b
ENST00000333167
6b
ENSE00001617234
chr3:
38173496-38173417
80
THIK_HUMAN
108-135
28
2
A:108-135
B:108-135
28
28
1.7
ENST00000333167
7
ENSE00001681904
chr3:
38173129-38173087
43
THIK_HUMAN
135-149
15
2
A:135-149
B:135-149
15
15
1.8b
ENST00000333167
8b
ENSE00001600176
chr3:
38170879-38170781
99
THIK_HUMAN
149-182
34
2
A:149-183 (gaps)
B:149-183 (gaps)
35
35
1.9a
ENST00000333167
9a
ENSE00001740629
chr3:
38169357-38169277
81
THIK_HUMAN
182-209
28
2
A:183-210
B:183-210
28
28
1.10a
ENST00000333167
10a
ENSE00001799097
chr3:
38168191-38168001
191
THIK_HUMAN
209-273
65
2
A:210-274
B:210-274
65
65
1.10h
ENST00000333167
10h
ENSE00001702141
chr3:
38167832-38167653
180
THIK_HUMAN
273-333
61
2
A:274-334
B:274-334
61
61
1.10i
ENST00000333167
10i
ENSE00001593720
chr3:
38167372-38167317
56
THIK_HUMAN
333-351
19
2
A:334-352
B:334-352
19
19
1.11a
ENST00000333167
11a
ENSE00001599475
chr3:
38167201-38167056
146
THIK_HUMAN
352-400
49
2
A:353-401
B:353-401
49
49
1.11i
ENST00000333167
11i
ENSE00001909066
chr3:
38164613-38164201
413
THIK_HUMAN
400-424
25
2
A:401-423
B:401-425
23
25
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2iika1 (A:33-297)
1b: SCOP_d2iika2 (A:298-423)
1c: SCOP_d2iikb1 (B:21-297)
1d: SCOP_d2iikb2 (B:298-425)
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
automated matches
(108)
Protein domain
:
automated matches
(108)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d2iika1
A:33-297
1b
d2iika2
A:298-423
1c
d2iikb1
B:21-297
1d
d2iikb2
B:298-425
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
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Asym.Unit (122 KB)
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