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Asym. Unit
Info
Asym.Unit (304 KB)
Biol.Unit 1 (872 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A CUBIC CORE OF THE DIHYDROLIPOAMIDE ACYLTRANSFERASE (E2B) COMPONENT IN THE BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE COMPLEX (BCKDC), APO FORM
Authors
:
M. Kato, R. M. Wynn, J. L. Chuang, C. A. Brautigam, M. Custorio, D. T. Chua
Date
:
27 Sep 06 (Deposition) - 26 Dec 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (3x)
Keywords
:
Cubic Core, Homo Trimer, Apo Form, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Kato, R. M. Wynn, J. L. Chuang, C. A. Brautigam, M. Custorio, D. T. Chuang
A Synchronized Substrate-Gating Mechanism Revealed By Cubic-Core Structure Of The Bovine Branched-Chain Alpha-Ketoacid Dehydrogenase Complex.
Embo J. V. 25 5983 2006
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Hetero Components
(2, 28)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
1l: ACETATE ION (ACTl)
1m: ACETATE ION (ACTm)
1n: ACETATE ION (ACTn)
1o: ACETATE ION (ACTo)
1p: ACETATE ION (ACTp)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
2l: CHLORIDE ION (CLl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
16
Ligand/Ion
ACETATE ION
2
CL
12
Ligand/Ion
CHLORIDE ION
[
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Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:350 , VAL A:351 , LEU A:353 , ILE A:359 , ACT A:601
BINDING SITE FOR RESIDUE ACT A 600
02
AC2
SOFTWARE
ASP A:288 , LEU A:293 , ACT A:600 , HIS B:391 , GLY B:396
BINDING SITE FOR RESIDUE ACT A 601
03
AC3
SOFTWARE
PRO B:350 , VAL B:351 , LEU B:353 , ILE B:359 , ACT B:601
BINDING SITE FOR RESIDUE ACT B 600
04
AC4
SOFTWARE
ASP B:288 , LEU B:293 , ACT B:600 , HIS C:391 , ASP C:395 , GLY C:396
BINDING SITE FOR RESIDUE ACT B 601
05
AC5
SOFTWARE
PHE A:215 , VAL C:351 , LEU C:353 , ACT C:601
BINDING SITE FOR RESIDUE ACT C 600
06
AC6
SOFTWARE
HIS A:391 , ASP A:395 , GLY A:396 , ASP C:288 , LEU C:293 , ACT C:600
BINDING SITE FOR RESIDUE ACT C 601
07
AC7
SOFTWARE
PRO D:350 , VAL D:351 , ILE D:359 , ACT D:601
BINDING SITE FOR RESIDUE ACT D 600
08
AC8
SOFTWARE
ASP D:288 , LEU D:293 , ACT D:600 , HIS E:391 , ASP E:395 , GLY E:396
BINDING SITE FOR RESIDUE ACT D 601
09
AC9
SOFTWARE
PRO E:350 , VAL E:351 , LEU E:353 , ACT E:601 , PHE F:215
BINDING SITE FOR RESIDUE ACT E 600
10
BC1
SOFTWARE
ASP E:288 , LEU E:293 , SER E:338 , ACT E:600 , HIS F:391 , ASP F:395 , GLY F:396
BINDING SITE FOR RESIDUE ACT E 601
11
BC2
SOFTWARE
PRO F:350 , VAL F:351 , LEU F:353 , ILE F:359 , ACT F:601
BINDING SITE FOR RESIDUE ACT F 600
12
BC3
SOFTWARE
HIS D:391 , ASP D:395 , GLY D:396 , ASP F:288 , LEU F:293 , ACT F:600
BINDING SITE FOR RESIDUE ACT F 601
13
BC4
SOFTWARE
MET G:206 , PRO G:350 , VAL G:351 , LEU G:353 , ILE G:359 , ACT G:601
BINDING SITE FOR RESIDUE ACT G 600
14
BC5
SOFTWARE
ASP G:288 , LEU G:293 , HIS G:391 , GLY G:396 , ACT G:600
BINDING SITE FOR RESIDUE ACT G 601
15
BC6
SOFTWARE
PHE H:215 , PRO H:350 , VAL H:351 , LEU H:353 , ILE H:359 , ACT H:601
BINDING SITE FOR RESIDUE ACT H 600
16
BC7
SOFTWARE
ASP H:288 , LEU H:293 , HIS H:391 , ASP H:395 , GLY H:396 , ACT H:600
BINDING SITE FOR RESIDUE ACT H 601
17
BC8
SOFTWARE
HOH H:77 , LYS H:349
BINDING SITE FOR RESIDUE CL H 602
18
BC9
SOFTWARE
HOH A:10 , LYS C:349
BINDING SITE FOR RESIDUE CL C 602
19
CC1
SOFTWARE
LYS A:349 , HOH B:100
BINDING SITE FOR RESIDUE CL A 602
20
CC2
SOFTWARE
LYS E:349 , HOH F:31
BINDING SITE FOR RESIDUE CL E 602
21
CC3
SOFTWARE
HOH D:59 , LYS F:349
BINDING SITE FOR RESIDUE CL F 602
22
CC4
SOFTWARE
LYS B:349 , HOH C:93
BINDING SITE FOR RESIDUE CL B 602
23
CC5
SOFTWARE
ARG G:370
BINDING SITE FOR RESIDUE CL G 602
24
CC6
SOFTWARE
ARG C:370
BINDING SITE FOR RESIDUE CL A 603
25
CC7
SOFTWARE
ARG F:370
BINDING SITE FOR RESIDUE CL E 603
26
CC8
SOFTWARE
LYS D:349 , HOH E:63
BINDING SITE FOR RESIDUE CL D 602
27
CC9
SOFTWARE
HOH G:122 , LYS G:349
BINDING SITE FOR RESIDUE CL G 603
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(6, 48)
Info
All Exons
Exon 1.6 (A:188-197 | B:188-197 | C:188-197 ...)
Exon 1.7 (A:197-252 | B:197-252 | C:197-252 ...)
Exon 1.8 (A:253-278 | B:253-278 | C:253-278 ...)
Exon 1.9 (A:279-342 | B:279-342 | C:279-342 ...)
Exon 1.10 (A:343-366 | B:343-366 | C:343-366 ...)
Exon 1.11 (A:367-421 | B:367-421 | C:367-421 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9
5: Boundary 1.9/1.10
6: Boundary 1.10/1.11
7: Boundary 1.11/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000008292
1
ENSBTAE00000066923
chr3:
46005062-46005011
52
ODB2_BOVIN
1-17
17
0
-
-
1.2
ENSBTAT00000008292
2
ENSBTAE00000066924
chr3:
45998129-45998006
124
ODB2_BOVIN
18-59
42
0
-
-
1.3
ENSBTAT00000008292
3
ENSBTAE00000066927
chr3:
45994079-45994004
76
ODB2_BOVIN
59-84
26
0
-
-
1.4
ENSBTAT00000008292
4
ENSBTAE00000066928
chr3:
45992742-45992561
182
ODB2_BOVIN
84-145
62
0
-
-
1.5
ENSBTAT00000008292
5
ENSBTAE00000066929
chr3:
45984019-45983898
122
ODB2_BOVIN
145-185
41
0
-
-
1.6
ENSBTAT00000008292
6
ENSBTAE00000271415
chr3:
45981101-45980885
217
ODB2_BOVIN
186-258
73
8
A:188-197
B:188-197
C:188-197
D:188-197
E:188-197
F:188-197
G:188-197
H:188-197
10
10
10
10
10
10
10
10
1.7
ENSBTAT00000008292
7
ENSBTAE00000066931
chr3:
45975055-45974889
167
ODB2_BOVIN
258-313
56
8
A:197-252
B:197-252
C:197-252
D:197-252
E:197-252
F:197-252
G:197-252
H:197-252
56
56
56
56
56
56
56
56
1.8
ENSBTAT00000008292
8
ENSBTAE00000066932
chr3:
45970598-45970521
78
ODB2_BOVIN
314-339
26
8
A:253-278
B:253-278
C:253-278
D:253-278
E:253-278
F:253-278
G:253-278
H:253-278
26
26
26
26
26
26
26
26
1.9
ENSBTAT00000008292
9
ENSBTAE00000066933
chr3:
45969014-45968823
192
ODB2_BOVIN
340-403
64
8
A:279-342
B:279-342
C:279-342
D:279-342
E:279-342
F:279-342
G:279-342
H:279-342
64
64
64
64
64
64
64
64
1.10
ENSBTAT00000008292
10
ENSBTAE00000066934
chr3:
45968682-45968611
72
ODB2_BOVIN
404-427
24
8
A:343-366
B:343-366
C:343-366
D:343-366
E:343-366
F:343-366
G:343-366
H:343-366
24
24
24
24
24
24
24
24
1.11
ENSBTAT00000008292
11
ENSBTAE00000066935
chr3:
45964419-45962829
1591
ODB2_BOVIN
428-482
55
8
A:367-421
B:367-421
C:367-421
D:367-421
E:367-421
F:367-421
G:367-421
H:367-421
55
55
55
55
55
55
55
55
[
close EXON info
]
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2ihwa_ (A:)
1b: SCOP_d2ihwb_ (B:)
1c: SCOP_d2ihwc_ (C:)
1d: SCOP_d2ihwd_ (D:)
1e: SCOP_d2ihwe_ (E:)
1f: SCOP_d2ihwf_ (F:)
1g: SCOP_d2ihwg_ (G:)
1h: SCOP_d2ihwh_ (H:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
CoA-dependent acyltransferases
(53)
Superfamily
:
CoA-dependent acyltransferases
(53)
Family
:
automated matches
(7)
Protein domain
:
automated matches
(7)
Cow (Bos taurus) [TaxId: 9913]
(4)
1a
d2ihwa_
A:
1b
d2ihwb_
B:
1c
d2ihwc_
C:
1d
d2ihwd_
D:
1e
d2ihwe_
E:
1f
d2ihwf_
F:
1g
d2ihwg_
G:
1h
d2ihwh_
H:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
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Sorry, no Info available
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Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
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