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2IHT
Asym. Unit
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Asym.Unit (388 KB)
Biol.Unit 1 (376 KB)
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(1)
Title
:
CARBOXYETHYLARGININE SYNTHASE FROM STREPTOMYCES CLAVULIGERUS: SEMET STRUCTURE
Authors
:
M. E. Caines, C. J. Schofield
Date
:
27 Sep 06 (Deposition) - 18 Sep 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Thiamin Diphosphate Complex, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. E. Caines, J. L. Sorensen, C. J. Schofield
Structural And Mechanistic Studies On N(2)-(2-Carboxyethyl)Arginine Synthase.
Biochem. Biophys. Res. Commun. V. 385 512 2009
[
close entry info
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Hetero Components
(5, 60)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
5a: THIAMINE DIPHOSPHATE (TPPa)
5b: THIAMINE DIPHOSPHATE (TPPb)
5c: THIAMINE DIPHOSPHATE (TPPc)
5d: THIAMINE DIPHOSPHATE (TPPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
MG
4
Ligand/Ion
MAGNESIUM ION
3
MSE
40
Mod. Amino Acid
SELENOMETHIONINE
4
SO4
8
Ligand/Ion
SULFATE ION
5
TPP
4
Ligand/Ion
THIAMINE DIPHOSPHATE
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:463 , ASN A:490 , THR A:492 , TPP A:600 , HOH A:793
BINDING SITE FOR RESIDUE MG A 601
02
AC2
SOFTWARE
TYR A:271 , ARG A:414 , HIS A:415 , LEU A:495 , HOH A:667 , HOH A:697 , HOH A:817 , HOH A:834 , HIS B:120 , GLN B:121
BINDING SITE FOR RESIDUE SO4 A 602
03
AC3
SOFTWARE
ASN A:490 , ASN A:560 , TYR A:561 , ASP A:562 , PHE A:563 , HOH A:791
BINDING SITE FOR RESIDUE SO4 A 603
04
AC4
SOFTWARE
ASP B:463 , ASN B:490 , THR B:492 , TPP B:600 , HOH B:913
BINDING SITE FOR RESIDUE MG B 601
05
AC5
SOFTWARE
HIS A:120 , GLN A:121 , HOH A:887 , TYR B:271 , ARG B:414 , HIS B:415 , LEU B:495 , HOH B:661 , HOH B:737 , HOH B:914
BINDING SITE FOR RESIDUE SO4 B 602
06
AC6
SOFTWARE
ASN B:490 , ASN B:560 , TYR B:561 , ASP B:562 , PHE B:563 , HOH B:743 , HOH B:1038
BINDING SITE FOR RESIDUE SO4 B 603
07
AC7
SOFTWARE
ASP C:463 , ASN C:490 , THR C:492 , TPP C:600 , HOH C:834
BINDING SITE FOR RESIDUE MG C 601
08
AC8
SOFTWARE
TYR C:271 , ARG C:414 , HIS C:415 , LEU C:495 , HOH C:646 , HOH C:856 , HOH C:884 , HIS D:120 , HOH D:2139
BINDING SITE FOR RESIDUE SO4 C 602
09
AC9
SOFTWARE
ASN C:490 , ASN C:560 , TYR C:561 , ASP C:562 , HOH C:675 , HOH C:905
BINDING SITE FOR RESIDUE SO4 C 603
10
BC1
SOFTWARE
ASP D:463 , ASN D:490 , THR D:492 , TPP D:600 , HOH D:2106
BINDING SITE FOR RESIDUE MG D 601
11
BC2
SOFTWARE
HIS C:120 , GLN C:121 , HOH C:846 , TYR D:271 , ARG D:414 , HIS D:415 , LEU D:495 , HOH D:1972 , HOH D:2001 , HOH D:2141
BINDING SITE FOR RESIDUE SO4 D 602
12
BC3
SOFTWARE
ASN D:490 , ASN D:560 , TYR D:561 , ASP D:562 , HOH D:2108 , HOH D:2234 , HOH D:2277 , HOH D:2292
BINDING SITE FOR RESIDUE SO4 D 603
13
BC4
SOFTWARE
ILE A:410 , GLY A:411 , PHE A:412 , PHE A:413 , SER A:436 , SER A:437 , PHE A:438 , GLY A:462 , ASP A:463 , GLY A:464 , GLY A:465 , ASN A:490 , THR A:492 , ASN A:493 , GLY A:494 , LEU A:495 , TYR A:561 , MG A:601 , HOH A:610 , HOH A:793 , GLU B:57 , THR B:80 , PRO B:83 , ASN B:87
BINDING SITE FOR RESIDUE TPP A 600
14
BC5
SOFTWARE
GLU A:57 , THR A:80 , PRO A:83 , ASN A:87 , HOH A:887 , ILE B:410 , GLY B:411 , PHE B:412 , PHE B:413 , SER B:436 , SER B:437 , PHE B:438 , GLY B:462 , ASP B:463 , GLY B:464 , GLY B:465 , ASN B:490 , THR B:492 , ASN B:493 , GLY B:494 , LEU B:495 , TYR B:561 , MG B:601 , HOH B:606
BINDING SITE FOR RESIDUE TPP B 600
15
BC6
SOFTWARE
ILE C:410 , GLY C:411 , PHE C:412 , PHE C:413 , SER C:436 , SER C:437 , PHE C:438 , GLY C:462 , ASP C:463 , GLY C:464 , GLY C:465 , ASN C:490 , THR C:492 , ASN C:493 , GLY C:494 , LEU C:495 , TYR C:561 , MG C:601 , HOH C:618 , GLU D:57 , THR D:80 , ASN D:87 , HOH D:2139
BINDING SITE FOR RESIDUE TPP C 600
16
BC7
SOFTWARE
GLU C:57 , THR C:80 , PRO C:83 , ASN C:87 , ILE D:410 , GLY D:411 , PHE D:412 , PHE D:413 , SER D:436 , SER D:437 , PHE D:438 , GLY D:462 , ASP D:463 , GLY D:464 , GLY D:465 , ASN D:490 , THR D:492 , ASN D:493 , GLY D:494 , LEU D:495 , TYR D:561 , MG D:601 , HOH D:1910 , HOH D:2106
BINDING SITE FOR RESIDUE TPP D 600
17
BC8
SOFTWARE
GLU A:370 , HIS A:385 , HOH A:901
BINDING SITE FOR RESIDUE GOL A 604
18
BC9
SOFTWARE
GLU B:370 , PHE B:371 , ASP B:374 , HIS B:385 , HOH B:1045 , HOH B:1087
BINDING SITE FOR RESIDUE GOL B 604
19
CC1
SOFTWARE
GLU D:370 , ASP D:374 , HIS D:385 , HOH D:2281 , HOH D:2313
BINDING SITE FOR RESIDUE GOL D 604
20
CC2
SOFTWARE
HOH D:1911 , HOH D:2024 , HOH D:2026 , HOH D:2123 , HOH D:2311
BINDING SITE FOR RESIDUE GOL D 1905
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: TPP_ENZYMES (A:446-465,B:446-465,C:446-465,D:44...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TPP_ENZYMES
PS00187
Thiamine pyrophosphate enzymes signature.
CEAS_STRCL
446-465
4
A:446-465
B:446-465
C:446-465
D:446-465
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d2ihta1 (A:198-374)
1b: SCOP_d2ihtb1 (B:198-374)
1c: SCOP_d2ihtc1 (C:198-374)
1d: SCOP_d2ihtd1 (D:198-374)
2a: SCOP_d2ihta3 (A:375-573)
2b: SCOP_d2ihtb3 (B:375-573)
2c: SCOP_d2ihtc3 (C:375-573)
2d: SCOP_d2ihtd3 (D:375-573)
3a: SCOP_d2ihta2 (A:11-197)
3b: SCOP_d2ihtb2 (B:11-197)
3c: SCOP_d2ihtc2 (C:11-197)
3d: SCOP_d2ihtd2 (D:11-197)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
DHS-like NAD/FAD-binding domain
(176)
Superfamily
:
DHS-like NAD/FAD-binding domain
(176)
Family
:
Pyruvate oxidase and decarboxylase, middle domain
(74)
Protein domain
:
Carboxyethylarginine synthase
(6)
Streptomyces clavuligerus [TaxId: 1901]
(6)
1a
d2ihta1
A:198-374
1b
d2ihtb1
B:198-374
1c
d2ihtc1
C:198-374
1d
d2ihtd1
D:198-374
Fold
:
Thiamin diphosphate-binding fold (THDP-binding)
(289)
Superfamily
:
Thiamin diphosphate-binding fold (THDP-binding)
(289)
Family
:
Pyruvate oxidase and decarboxylase PP module
(43)
Protein domain
:
Carboxyethylarginine synthase
(6)
Streptomyces clavuligerus [TaxId: 1901]
(6)
2a
d2ihta3
A:375-573
2b
d2ihtb3
B:375-573
2c
d2ihtc3
C:375-573
2d
d2ihtd3
D:375-573
Family
:
Pyruvate oxidase and decarboxylase Pyr module
(43)
Protein domain
:
Carboxyethylarginine synthase
(6)
Streptomyces clavuligerus [TaxId: 1901]
(6)
3a
d2ihta2
A:11-197
3b
d2ihtb2
B:11-197
3c
d2ihtc2
C:11-197
3d
d2ihtd2
D:11-197
[
close SCOP info
]
CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_2ihtA03 (A:360-573)
1b: CATH_2ihtB03 (B:360-573)
1c: CATH_2ihtC03 (C:360-573)
1d: CATH_2ihtB01 (B:11-195)
1e: CATH_2ihtA01 (A:11-195)
1f: CATH_2ihtC01 (C:11-195)
1g: CATH_2ihtD01 (D:11-195)
1h: CATH_2ihtD03 (D:360-573)
2a: CATH_2ihtA02 (A:196-359)
2b: CATH_2ihtC02 (C:196-359)
2c: CATH_2ihtD02 (D:196-359)
2d: CATH_2ihtB02 (B:196-359)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.970, no name defined]
(144)
Streptomyces clavuligerus. Organism_taxid: 1901.
(3)
1a
2ihtA03
A:360-573
1b
2ihtB03
B:360-573
1c
2ihtC03
C:360-573
1d
2ihtB01
B:11-195
1e
2ihtA01
A:11-195
1f
2ihtC01
C:11-195
1g
2ihtD01
D:11-195
1h
2ihtD03
D:360-573
Homologous Superfamily
:
TPP-binding domain
(120)
Streptomyces clavuligerus. Organism_taxid: 1901.
(3)
2a
2ihtA02
A:196-359
2b
2ihtC02
C:196-359
2c
2ihtD02
D:196-359
2d
2ihtB02
B:196-359
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asym.Unit (388 KB)
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