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2IHB
Asym. Unit
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Asym.Unit (75 KB)
Biol.Unit 1 (70 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HETERODIMERIC COMPLEX OF HUMAN RGS10 AND ACTIVATED GI ALPHA 3
Authors
:
M. Soundararajan, A. P. Turnbull, E. Papagrigoriou, A. C. W. Pike, G. Bu E. Ugochukwu, F. Gorrec, F. Von Delft, J. Weigelt, A. Edwards, C. Arro M. Sundstrom, D. A. Doyle, Structural Genomics Consortium (Sgc)
Date
:
26 Sep 06 (Deposition) - 21 Nov 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.71
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
G Protein Signalling, Rgs, Heterotrimeric G Protein, Signalling Complex, Structural Genomics, Structural Genomics Consortium, Sgc, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Soundararajan, F. S. Willard, A. J. Kimple, A. P. Turnbull, L. J. Ball, G. A. Schoch, C. Gileadi, O. Y. Fedorov, E. F. Dowler, V. A. Higman, S. Q. Hutsell, M. Sundstrom, D. A. Doyle, D. P. Siderovski
Structural Diversity In The Rgs Domain And Its Interaction With Heterotrimeric G Protein Alpha-Subunits.
Proc. Natl. Acad. Sci. Usa V. 105 6457 2008
[
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: TETRAFLUOROALUMINATE ION (ALFa)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ALF
1
Ligand/Ion
TETRAFLUOROALUMINATE ION
2
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
MG
1
Ligand/Ion
MAGNESIUM ION
[
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]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:42 , GLU A:43 , LYS A:46 , ARG A:178 , LYS A:180 , THR A:181 , VAL A:201 , GLY A:203 , GLN A:204 , MG A:355 , GDP A:356 , HOH A:358 , HOH A:359 , HOH A:360
BINDING SITE FOR RESIDUE ALF A 354
2
AC2
SOFTWARE
SER A:47 , THR A:181 , ALF A:354 , GDP A:356 , HOH A:359 , HOH A:360
BINDING SITE FOR RESIDUE MG A 355
3
AC3
SOFTWARE
GLU A:43 , SER A:44 , GLY A:45 , LYS A:46 , SER A:47 , THR A:48 , SER A:151 , LEU A:175 , ARG A:176 , THR A:177 , ARG A:178 , ASN A:269 , LYS A:270 , ASP A:272 , LEU A:273 , CYS A:325 , ALA A:326 , THR A:327 , ALF A:354 , MG A:355 , HOH A:359 , HOH A:360
BINDING SITE FOR RESIDUE GDP A 356
[
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]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_068558 (G40R, chain A, )
2: VAR_011896 (A94V, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_068558
G
40
R
GNAI3_HUMAN
Disease (ARCND1)
---
A
G
40
R
2
UniProt
VAR_011896
A
94
V
RGS10_HUMAN
Polymorphism
1802228
B
A
94
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RGS (B:33-145)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RGS
PS50132
RGS domain profile.
RGS10_HUMAN
33-146
1
B:33-145
[
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]
Exons
(12, 12)
Info
All Exons
Exon 1.3a (B:24-48)
Exon 1.4a (B:49-77)
Exon 1.6b (B:78-125 (gaps))
Exon 1.8b (B:126-145)
Exon 2.1 (A:33-40)
Exon 2.2 (A:40-54)
Exon 2.3 (A:54-101)
Exon 2.4 (A:102-154)
Exon 2.5 (A:154-197)
Exon 2.6 (A:197-240)
Exon 2.7 (A:241-292)
Exon 2.8 (A:292-349)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.3a
02: Boundary 1.3a/1.4a
03: Boundary 1.4a/1.6b
04: Boundary 1.6b/1.8b
05: Boundary 1.8b/-
06: Boundary -/2.1
07: Boundary 2.1/2.2
08: Boundary 2.2/2.3
09: Boundary 2.3/2.4
10: Boundary 2.4/2.5
11: Boundary 2.5/2.6
12: Boundary 2.6/2.7
13: Boundary 2.7/2.8
14: Boundary 2.8/2.9
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000369101
3a
ENSE00001448806
chr10:
121286989-121286818
172
RGS10_HUMAN
1-48
48
1
B:24-48
25
1.4a
ENST00000369101
4a
ENSE00000988020
chr10:
121285630-121285544
87
RGS10_HUMAN
49-77
29
1
B:49-77
29
1.6b
ENST00000369101
6b
ENSE00000988021
chr10:
121275164-121275021
144
RGS10_HUMAN
78-125
48
1
B:78-125 (gaps)
48
1.8b
ENST00000369101
8b
ENSE00001955073
chr10:
121259771-121259437
335
RGS10_HUMAN
126-173
48
1
B:126-145
20
2.1
ENST00000369851
1
ENSE00001451089
chr1:
110091233-110091460
228
GNAI3_HUMAN
1-40
40
1
A:33-40
8
2.2
ENST00000369851
2
ENSE00001781395
chr1:
110116359-110116401
43
GNAI3_HUMAN
40-54
15
1
A:40-54
15
2.3
ENST00000369851
3
ENSE00000783439
chr1:
110116518-110116659
142
GNAI3_HUMAN
54-101
48
1
A:54-101
48
2.4
ENST00000369851
4
ENSE00000826739
chr1:
110121826-110121983
158
GNAI3_HUMAN
102-154
53
1
A:102-154
53
2.5
ENST00000369851
5
ENSE00000826740
chr1:
110125059-110125187
129
GNAI3_HUMAN
154-197
44
1
A:154-197
44
2.6
ENST00000369851
6
ENSE00001740751
chr1:
110128838-110128967
130
GNAI3_HUMAN
197-240
44
1
A:197-240
44
2.7
ENST00000369851
7
ENSE00001756567
chr1:
110129351-110129504
154
GNAI3_HUMAN
241-292
52
1
A:241-292
52
2.8
ENST00000369851
8
ENSE00000913041
chr1:
110134665-110134877
213
GNAI3_HUMAN
292-354
63
1
A:292-349
58
2.9
ENST00000369851
9
ENSE00001342841
chr1:
110134967-110136975
2009
GNAI3_HUMAN
-
0
0
-
-
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2ihbb_ (B:)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Regulator of G-protein signaling, RGS
(52)
Superfamily
:
Regulator of G-protein signaling, RGS
(52)
Family
:
automated matches
(25)
Protein domain
:
automated matches
(25)
Human (Homo sapiens) [TaxId: 9606]
(24)
1a
d2ihbb_
B:
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2ihbA01 (A:33-61,A:181-349)
2a: CATH_2ihbA02 (A:62-180)
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2ihbA01
A:33-61,A:181-349
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GI Alpha 1, domain 2-like
(67)
Homologous Superfamily
:
GI Alpha 1, domain 2-like
(66)
Human (Homo sapiens)
(13)
2a
2ihbA02
A:62-180
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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