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2IH9
Biol. Unit 2
Info
Asym.Unit (206 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (101 KB)
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(1)
Title
:
A HIGH-DOSE CRYSTAL STRUCTURE OF A RECOMBINANT MELANOCARBUS ALBOMYCES LACCASE
Authors
:
N. Hakulinen, J. Rouvinen
Date
:
26 Sep 06 (Deposition) - 14 Nov 06 (Release) - 17 Aug 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Laccase, Multicopper Oxidase, Redox Enzyme, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Hakulinen, K. Kruus, A. Koivula, J. Rouvinen
A Crystallographic And Spectroscopic Study On The Effect Of X-Ray Radiation On The Crystal Structure Of Melanocarpus Albomyces Laccase.
Biochem. Biophys. Res. Commun. V. 350 929 2006
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: COPPER (II) ION (CUa)
3b: COPPER (II) ION (CUb)
3c: COPPER (II) ION (CUc)
3d: COPPER (II) ION (CUd)
3e: COPPER (II) ION (CUe)
3f: COPPER (II) ION (CUf)
3g: COPPER (II) ION (CUg)
3h: COPPER (II) ION (CUh)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
CU
-1
Ligand/Ion
COPPER (II) ION
4
NAG
11
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SO4
1
Ligand/Ion
SULFATE ION
[
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]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: BC2 (SOFTWARE)
03: BC4 (SOFTWARE)
04: BC5 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
13: CC5 (SOFTWARE)
14: CC6 (SOFTWARE)
15: DC3 (SOFTWARE)
16: DC4 (SOFTWARE)
17: DC5 (SOFTWARE)
18: DC6 (SOFTWARE)
19: DC7 (SOFTWARE)
20: DC8 (SOFTWARE)
21: DC9 (SOFTWARE)
22: EC1 (SOFTWARE)
23: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:39 , ASN A:84 , GLU B:78 , ARG B:126
BINDING SITE FOR RESIDUE NAG A 700
02
BC2
SOFTWARE
LYS A:386 , TYR A:391 , ASN A:396 , SER A:398 , GLN B:530 , HOH B:912
BINDING SITE FOR RESIDUE NAG A 750
03
BC4
SOFTWARE
GLU A:78 , ARG A:126 , ASN B:39 , THR B:41 , ASN B:84
BINDING SITE FOR RESIDUE NAG B 700
04
BC5
SOFTWARE
LYS B:56 , THR B:87 , ASN B:88 , ASP B:181 , ASN B:550 , TYR B:552 , PRO B:553 , NAG B:711 , HOH B:848 , HOH B:857 , HOH B:883 , HOH B:890 , HOH B:970
BINDING SITE FOR RESIDUE NAG B 710
05
BC6
SOFTWARE
GLU B:55 , ALA B:179 , ASP B:181 , ASP B:182 , NAG B:710 , BMA B:712 , HOH B:818
BINDING SITE FOR RESIDUE NAG B 711
06
BC7
SOFTWARE
NAG B:711
BINDING SITE FOR RESIDUE BMA B 712
07
BC8
SOFTWARE
ASN B:216 , ILE B:309 , HIS B:311 , GLY B:317 , NAG B:721 , HOH B:1071
BINDING SITE FOR RESIDUE NAG B 720
08
BC9
SOFTWARE
TRP B:287 , ASN B:289 , THR B:291 , HIS B:305 , ALA B:307 , GLU B:323 , NAG B:731 , HOH B:1006
BINDING SITE FOR RESIDUE NAG B 730
09
CC1
SOFTWARE
TYR B:214 , TRP B:287 , HIS B:305 , GLU B:323 , NAG B:730 , BMA B:732
BINDING SITE FOR RESIDUE NAG B 731
10
CC2
SOFTWARE
NAG B:731 , HOH B:944 , HOH B:1113
BINDING SITE FOR RESIDUE BMA B 732
11
CC3
SOFTWARE
PRO B:355 , ASP B:356 , LEU B:359 , ASN B:376 , NAG B:741 , HOH B:910
BINDING SITE FOR RESIDUE NAG B 740
12
CC4
SOFTWARE
ASP B:356 , NAG B:740
BINDING SITE FOR RESIDUE NAG B 741
13
CC5
SOFTWARE
ASP A:379 , ASN A:381 , SER A:402 , HOH A:931 , LYS B:386 , TYR B:391 , ASN B:396 , HOH B:879 , HOH B:1034
BINDING SITE FOR RESIDUE NAG B 750
14
CC6
SOFTWARE
LEU B:167 , PHE B:170 , ASN B:201 , VAL B:217 , HOH B:907 , HOH B:1050 , HOH B:1130
BINDING SITE FOR RESIDUE NAG B 760
15
DC3
SOFTWARE
HIS B:431 , CYS B:503 , HIS B:508
BINDING SITE FOR RESIDUE CU B 601
16
DC4
SOFTWARE
HIS B:140 , HIS B:436 , HIS B:502 , HOH B:1141
BINDING SITE FOR RESIDUE CU B 602
17
DC5
SOFTWARE
HIS B:95 , HIS B:138 , HIS B:504 , HOH B:1141
BINDING SITE FOR RESIDUE CU B 603
18
DC6
SOFTWARE
HIS B:93 , HIS B:434 , HIS B:436 , CL B:610
BINDING SITE FOR RESIDUE CU B 604
19
DC7
SOFTWARE
HIS B:93 , GLY B:96 , HIS B:434 , CU B:604 , HOH B:821
BINDING SITE FOR RESIDUE CL B 610
20
DC8
SOFTWARE
ARG A:128 , ARG A:130 , HOH A:1135 , ARG B:492
BINDING SITE FOR RESIDUE SO4 A 800
21
DC9
SOFTWARE
ARG A:520 , ARG A:527 , ARG B:520 , ARG B:527
BINDING SITE FOR RESIDUE SO4 A 801
22
EC1
SOFTWARE
ARG A:492 , ARG B:128 , ARG B:130
BINDING SITE FOR RESIDUE SO4 B 800
23
EC3
SOFTWARE
HIS B:311 , GLY B:314 , NAG B:720 , HOH B:990
BINDING SITE FOR RESIDUE NAG B 721
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: MULTICOPPER_OXIDASE1 (B:497-517)
2: MULTICOPPER_OXIDASE2 (B:502-513)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTICOPPER_OXIDASE1
PS00079
Multicopper oxidases signature 1.
LAC1_MELAO
547-567
1
-
B:497-517
2
MULTICOPPER_OXIDASE2
PS00080
Multicopper oxidases signature 2.
LAC1_MELAO
552-563
1
-
B:502-513
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2ih9a1 (A:1-162)
1b: SCOP_d2ih9a2 (A:163-343)
1c: SCOP_d2ih9a3 (A:344-559)
1d: SCOP_d2ih9b1 (B:1-162)
1e: SCOP_d2ih9b2 (B:163-343)
1f: SCOP_d2ih9b3 (B:344-559)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Multidomain cupredoxins
(146)
Protein domain
:
Laccase
(13)
Fungus (Melanocarpus albomyces) [TaxId: 204285]
(8)
1a
d2ih9a1
A:1-162
1b
d2ih9a2
A:163-343
1c
d2ih9a3
A:344-559
1d
d2ih9b1
B:1-162
1e
d2ih9b2
B:163-343
1f
d2ih9b3
B:344-559
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2ih9A01 (A:1-158)
1b: CATH_2ih9A02 (A:159-342)
1c: CATH_2ih9B02 (B:159-342)
1d: CATH_2ih9A03 (A:343-559)
1e: CATH_2ih9B03 (B:343-559)
1f: CATH_2ih9B01 (B:1-158)
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Topologies
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Melanocarpus albomyces. Organism_taxid: 204285. Strain: vtt d-96490.
(7)
1a
2ih9A01
A:1-158
1b
2ih9A02
A:159-342
1c
2ih9B02
B:159-342
1d
2ih9A03
A:343-559
1e
2ih9B03
B:343-559
1f
2ih9B01
B:1-158
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Chain B
Asymmetric Unit 1
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