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2IH8
Asym. Unit
Info
Asym.Unit (217 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (106 KB)
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(1)
Title
:
A LOW-DOSE CRYSTAL STRUCTURE OF A RECOMBINANT MELANOCARPUS ALBOMYCES LACCASE
Authors
:
N. Hakulinen, J. Rouvinen
Date
:
26 Sep 06 (Deposition) - 14 Nov 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Laccase, Multicopper Oxidase, Redox-Enzyme, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Hakulinen, K. Kruus, A. Koivula, J. Rouvinen
A Crystallographic And Spectroscopic Study On The Effect Of X-Ray Radiation On The Crystal Structure Of Melanocarpus Albomyces Laccase.
Biochem. Biophys. Res. Commun. V. 350 929 2006
[
close entry info
]
Hetero Components
(8, 46)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: COPPER (II) ION (CUa)
3b: COPPER (II) ION (CUb)
3c: COPPER (II) ION (CUc)
3d: COPPER (II) ION (CUd)
3e: COPPER (II) ION (CUe)
3f: COPPER (II) ION (CUf)
3g: COPPER (II) ION (CUg)
3h: COPPER (II) ION (CUh)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5q: N-ACETYL-D-GLUCOSAMINE (NAGq)
5r: N-ACETYL-D-GLUCOSAMINE (NAGr)
5s: N-ACETYL-D-GLUCOSAMINE (NAGs)
5t: N-ACETYL-D-GLUCOSAMINE (NAGt)
5u: N-ACETYL-D-GLUCOSAMINE (NAGu)
5v: N-ACETYL-D-GLUCOSAMINE (NAGv)
6a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
7a: OXYGEN MOLECULE (OXYa)
7b: OXYGEN MOLECULE (OXYb)
8a: SULFATE ION (SO4a)
8b: SULFATE ION (SO4b)
8c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
5
Ligand/Ion
BETA-D-MANNOSE
2
CL
2
Ligand/Ion
CHLORIDE ION
3
CU
8
Ligand/Ion
COPPER (II) ION
4
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
22
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
7
OXY
2
Ligand/Ion
OXYGEN MOLECULE
8
SO4
3
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(46, 46)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:39 , ASN A:84 , HOH A:1050 , GLU B:78 , ARG B:126
BINDING SITE FOR RESIDUE NAG A 700
02
AC2
SOFTWARE
LYS A:56 , MET A:58 , THR A:87 , ASN A:88 , ASP A:181 , ASN A:550 , TYR A:552 , NAG A:711 , HOH A:832 , HOH A:884 , HOH A:905 , HOH A:926 , HOH A:1089 , HOH A:1337
BINDING SITE FOR RESIDUE NAG A 710
03
AC3
SOFTWARE
GLU A:55 , LYS A:56 , ALA A:179 , ASP A:181 , ASP A:182 , NAG A:710 , BMA A:712 , HOH A:820 , HOH A:949
BINDING SITE FOR RESIDUE NAG A 711
04
AC4
SOFTWARE
NAG A:711 , MAN A:713 , MAN A:714
BINDING SITE FOR RESIDUE BMA A 712
05
AC5
SOFTWARE
BMA A:712
BINDING SITE FOR RESIDUE MAN A 713
06
AC6
SOFTWARE
GLU A:55 , ASP A:182 , BMA A:712 , HOH A:949
BINDING SITE FOR RESIDUE MAN A 714
07
AC7
SOFTWARE
ASN A:216 , THR A:218 , HIS A:311 , GLY A:317 , NAG A:721 , HOH A:984 , HOH A:991 , HOH A:1396
BINDING SITE FOR RESIDUE NAG A 720
08
AC8
SOFTWARE
HIS A:311 , GLY A:314 , NAG A:720 , BMA A:722
BINDING SITE FOR RESIDUE NAG A 721
09
AC9
SOFTWARE
NAG A:721 , HOH A:1327 , HOH A:1373
BINDING SITE FOR RESIDUE BMA A 722
10
BC1
SOFTWARE
TRP A:287 , ASN A:289 , THR A:291 , HIS A:305 , ALA A:307 , GLU A:323 , THR A:325 , NAG A:731 , HOH A:862 , HOH A:919 , HOH A:1223
BINDING SITE FOR RESIDUE NAG A 730
11
BC2
SOFTWARE
TYR A:214 , TRP A:287 , HIS A:305 , GLU A:323 , NAG A:730 , BMA A:732 , HOH A:1142
BINDING SITE FOR RESIDUE NAG A 731
12
BC3
SOFTWARE
NAG A:731
BINDING SITE FOR RESIDUE BMA A 732
13
BC4
SOFTWARE
PRO A:355 , ASP A:356 , THR A:358 , ASN A:376 , VAL A:406 , NAG A:741 , HOH A:1092
BINDING SITE FOR RESIDUE NAG A 740
14
BC5
SOFTWARE
NAG A:740
BINDING SITE FOR RESIDUE NAG A 741
15
BC6
SOFTWARE
LYS A:386 , TYR A:391 , ASN A:396 , HOH A:1132 , HOH A:1311 , HOH A:1323 , HOH A:1360 , GLN B:530 , GLU B:533
BINDING SITE FOR RESIDUE NAG A 750
16
BC7
SOFTWARE
LEU A:167 , ASN A:201 , VAL A:217 , HOH A:836 , HOH A:1104
BINDING SITE FOR RESIDUE NAG A 760
17
BC8
SOFTWARE
ASN A:244 , ALA A:282 , ASP A:322 , HOH A:1039 , HOH A:1120 , HOH A:1308 , HOH A:1387 , ARG B:281 , HOH B:934
BINDING SITE FOR RESIDUE NDG A 770
18
BC9
SOFTWARE
GLU A:78 , ARG A:126 , ASN B:39 , ASN B:84
BINDING SITE FOR RESIDUE NAG B 700
19
CC1
SOFTWARE
LYS B:56 , MET B:58 , THR B:87 , ASN B:88 , ASP B:181 , ASN B:550 , TYR B:552 , PRO B:553 , NAG B:711 , HOH B:869 , HOH B:888 , HOH B:984 , HOH B:1167
BINDING SITE FOR RESIDUE NAG B 710
20
CC2
SOFTWARE
GLU B:55 , ALA B:179 , ASP B:181 , ASP B:182 , NAG B:710 , BMA B:712 , HOH B:853 , HOH B:965 , HOH B:1082 , HOH B:1298
BINDING SITE FOR RESIDUE NAG B 711
21
CC3
SOFTWARE
NAG B:711 , MAN B:714
BINDING SITE FOR RESIDUE BMA B 712
22
CC4
SOFTWARE
GLU B:55 , ARG B:178 , BMA B:712 , HOH B:965
BINDING SITE FOR RESIDUE MAN B 714
23
CC5
SOFTWARE
ASN B:216 , THR B:218 , HIS B:311 , GLY B:317 , GLY B:318 , NAG B:721 , HOH B:928 , HOH B:1103
BINDING SITE FOR RESIDUE NAG B 720
24
CC6
SOFTWARE
HIS B:311 , GLY B:314 , NAG B:720 , HOH B:943 , HOH B:1069 , HOH B:1150 , HOH B:1334
BINDING SITE FOR RESIDUE NAG B 721
25
CC7
SOFTWARE
TRP B:287 , ASN B:289 , THR B:291 , HIS B:305 , ALA B:307 , GLU B:323 , THR B:325 , NAG B:731 , HOH B:913 , HOH B:1174
BINDING SITE FOR RESIDUE NAG B 730
26
CC8
SOFTWARE
TYR B:214 , TRP B:287 , HIS B:305 , GLU B:323 , NAG B:730 , BMA B:732
BINDING SITE FOR RESIDUE NAG B 731
27
CC9
SOFTWARE
NAG B:731 , HOH B:1148 , HOH B:1277
BINDING SITE FOR RESIDUE BMA B 732
28
DC1
SOFTWARE
PRO B:355 , ASP B:356 , THR B:358 , LEU B:359 , ASN B:376 , NAG B:741 , HOH B:1119
BINDING SITE FOR RESIDUE NAG B 740
29
DC2
SOFTWARE
ASP B:356 , NAG B:740
BINDING SITE FOR RESIDUE NAG B 741
30
DC3
SOFTWARE
ASP A:379 , ASN A:381 , HOH A:1284 , HOH A:1325 , LYS B:386 , TYR B:391 , ASN B:396 , HOH B:1217 , HOH B:1348
BINDING SITE FOR RESIDUE NAG B 750
31
DC4
SOFTWARE
LEU B:167 , ASN B:201 , VAL B:217 , HOH B:985 , HOH B:987 , HOH B:1184 , HOH B:1232 , HOH B:1276
BINDING SITE FOR RESIDUE NAG B 760
32
DC5
SOFTWARE
HIS A:431 , CYS A:503 , HIS A:508
BINDING SITE FOR RESIDUE CU A 601
33
DC6
SOFTWARE
HIS A:140 , HIS A:436 , HIS A:502 , OXY A:620
BINDING SITE FOR RESIDUE CU A 602
34
DC7
SOFTWARE
HIS A:95 , TRP A:136 , HIS A:138 , HIS A:504 , OXY A:620
BINDING SITE FOR RESIDUE CU A 603
35
DC8
SOFTWARE
HIS A:93 , HIS A:95 , HIS A:434 , HIS A:436 , CL A:610 , OXY A:620
BINDING SITE FOR RESIDUE CU A 604
36
DC9
SOFTWARE
HIS A:93 , HIS A:95 , GLY A:96 , HIS A:434 , CU A:604
BINDING SITE FOR RESIDUE CL A 610
37
EC1
SOFTWARE
ARG A:128 , ARG A:130 , ARG B:492
BINDING SITE FOR RESIDUE SO4 A 800
38
EC2
SOFTWARE
ARG A:520 , ARG A:527 , ARG B:520 , ARG B:527 , HOH B:825 , HOH B:981
BINDING SITE FOR RESIDUE SO4 A 801
39
EC3
SOFTWARE
HIS B:431 , CYS B:503 , HIS B:508 , LEU B:513
BINDING SITE FOR RESIDUE CU B 601
40
EC4
SOFTWARE
HIS B:140 , HIS B:436 , HIS B:502 , OXY B:620
BINDING SITE FOR RESIDUE CU B 602
41
EC5
SOFTWARE
HIS B:95 , HIS B:138 , HIS B:504 , OXY B:620
BINDING SITE FOR RESIDUE CU B 603
42
EC6
SOFTWARE
HIS B:93 , HIS B:95 , HIS B:434 , HIS B:436 , CL B:610 , OXY B:620
BINDING SITE FOR RESIDUE CU B 604
43
EC7
SOFTWARE
HIS B:93 , HIS B:95 , GLY B:96 , HIS B:434 , CU B:604 , HOH B:831
BINDING SITE FOR RESIDUE CL B 610
44
EC8
SOFTWARE
ARG A:492 , HOH A:1345 , ARG B:128 , ARG B:130 , HOH B:1201
BINDING SITE FOR RESIDUE SO4 B 800
45
EC9
SOFTWARE
HIS A:93 , HIS A:95 , HIS A:138 , HIS A:140 , HIS A:434 , HIS A:436 , HIS A:502 , HIS A:504 , CU A:602 , CU A:603 , CU A:604 , HOH A:1053
BINDING SITE FOR RESIDUE OXY A 620
46
FC1
SOFTWARE
HIS B:93 , HIS B:95 , HIS B:138 , HIS B:140 , HIS B:434 , HIS B:436 , HIS B:502 , HIS B:504 , CU B:602 , CU B:603 , CU B:604 , HOH B:970
BINDING SITE FOR RESIDUE OXY B 620
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: MULTICOPPER_OXIDASE1 (A:497-517,B:497-517)
2: MULTICOPPER_OXIDASE2 (A:502-513,B:502-513)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTICOPPER_OXIDASE1
PS00079
Multicopper oxidases signature 1.
LAC1_MELAO
547-567
2
A:497-517
B:497-517
2
MULTICOPPER_OXIDASE2
PS00080
Multicopper oxidases signature 2.
LAC1_MELAO
552-563
2
A:502-513
B:502-513
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2ih8a1 (A:1-162)
1b: SCOP_d2ih8a2 (A:163-343)
1c: SCOP_d2ih8a3 (A:344-559)
1d: SCOP_d2ih8b1 (B:1-162)
1e: SCOP_d2ih8b2 (B:163-343)
1f: SCOP_d2ih8b3 (B:344-559)
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Protein Domains
(
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(
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Organisms
(
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(
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Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Multidomain cupredoxins
(146)
Protein domain
:
Laccase
(13)
Fungus (Melanocarpus albomyces) [TaxId: 204285]
(8)
1a
d2ih8a1
A:1-162
1b
d2ih8a2
A:163-343
1c
d2ih8a3
A:344-559
1d
d2ih8b1
B:1-162
1e
d2ih8b2
B:163-343
1f
d2ih8b3
B:344-559
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2ih8A01 (A:1-158)
1b: CATH_2ih8A02 (A:159-342)
1c: CATH_2ih8B02 (B:159-342)
1d: CATH_2ih8A03 (A:343-559)
1e: CATH_2ih8B03 (B:343-559)
1f: CATH_2ih8B01 (B:1-158)
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Organisms
(
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(
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Melanocarpus albomyces. Organism_taxid: 204285. Strain: vtt d-96490.
(7)
1a
2ih8A01
A:1-158
1b
2ih8A02
A:159-342
1c
2ih8B02
B:159-342
1d
2ih8A03
A:343-559
1e
2ih8B03
B:343-559
1f
2ih8B01
B:1-158
[
close CATH info
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Pfam Domains
(0, 0)
Info
all PFAM domains
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