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2IH8
Biol. Unit 1
Info
Asym.Unit (217 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (106 KB)
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(1)
Title
:
A LOW-DOSE CRYSTAL STRUCTURE OF A RECOMBINANT MELANOCARPUS ALBOMYCES LACCASE
Authors
:
N. Hakulinen, J. Rouvinen
Date
:
26 Sep 06 (Deposition) - 14 Nov 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Laccase, Multicopper Oxidase, Redox-Enzyme, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Hakulinen, K. Kruus, A. Koivula, J. Rouvinen
A Crystallographic And Spectroscopic Study On The Effect Of X-Ray Radiation On The Crystal Structure Of Melanocarpus Albomyces Laccase.
Biochem. Biophys. Res. Commun. V. 350 929 2006
[
close entry info
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Hetero Components
(6, 20)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: COPPER (II) ION (CUa)
3b: COPPER (II) ION (CUb)
3c: COPPER (II) ION (CUc)
3d: COPPER (II) ION (CUd)
3e: COPPER (II) ION (CUe)
3f: COPPER (II) ION (CUf)
3g: COPPER (II) ION (CUg)
3h: COPPER (II) ION (CUh)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5q: N-ACETYL-D-GLUCOSAMINE (NAGq)
5r: N-ACETYL-D-GLUCOSAMINE (NAGr)
5s: N-ACETYL-D-GLUCOSAMINE (NAGs)
5t: N-ACETYL-D-GLUCOSAMINE (NAGt)
5u: N-ACETYL-D-GLUCOSAMINE (NAGu)
5v: N-ACETYL-D-GLUCOSAMINE (NAGv)
6a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
7a: OXYGEN MOLECULE (OXYa)
7b: OXYGEN MOLECULE (OXYb)
8a: SULFATE ION (SO4a)
8b: SULFATE ION (SO4b)
8c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
CU
-1
Ligand/Ion
COPPER (II) ION
4
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
11
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
7
OXY
1
Ligand/Ion
OXYGEN MOLECULE
8
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: DC3 (SOFTWARE)
20: DC5 (SOFTWARE)
21: DC6 (SOFTWARE)
22: DC7 (SOFTWARE)
23: DC8 (SOFTWARE)
24: DC9 (SOFTWARE)
25: EC1 (SOFTWARE)
26: EC2 (SOFTWARE)
27: EC8 (SOFTWARE)
28: EC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:39 , ASN A:84 , HOH A:1050 , GLU B:78 , ARG B:126
BINDING SITE FOR RESIDUE NAG A 700
02
AC2
SOFTWARE
LYS A:56 , MET A:58 , THR A:87 , ASN A:88 , ASP A:181 , ASN A:550 , TYR A:552 , NAG A:711 , HOH A:832 , HOH A:884 , HOH A:905 , HOH A:926 , HOH A:1089 , HOH A:1337
BINDING SITE FOR RESIDUE NAG A 710
03
AC3
SOFTWARE
GLU A:55 , LYS A:56 , ALA A:179 , ASP A:181 , ASP A:182 , NAG A:710 , BMA A:712 , HOH A:820 , HOH A:949
BINDING SITE FOR RESIDUE NAG A 711
04
AC4
SOFTWARE
NAG A:711 , MAN A:713 , MAN A:714
BINDING SITE FOR RESIDUE BMA A 712
05
AC5
SOFTWARE
BMA A:712
BINDING SITE FOR RESIDUE MAN A 713
06
AC6
SOFTWARE
GLU A:55 , ASP A:182 , BMA A:712 , HOH A:949
BINDING SITE FOR RESIDUE MAN A 714
07
AC7
SOFTWARE
ASN A:216 , THR A:218 , HIS A:311 , GLY A:317 , NAG A:721 , HOH A:984 , HOH A:991 , HOH A:1396
BINDING SITE FOR RESIDUE NAG A 720
08
AC8
SOFTWARE
HIS A:311 , GLY A:314 , NAG A:720 , BMA A:722
BINDING SITE FOR RESIDUE NAG A 721
09
AC9
SOFTWARE
NAG A:721 , HOH A:1327 , HOH A:1373
BINDING SITE FOR RESIDUE BMA A 722
10
BC1
SOFTWARE
TRP A:287 , ASN A:289 , THR A:291 , HIS A:305 , ALA A:307 , GLU A:323 , THR A:325 , NAG A:731 , HOH A:862 , HOH A:919 , HOH A:1223
BINDING SITE FOR RESIDUE NAG A 730
11
BC2
SOFTWARE
TYR A:214 , TRP A:287 , HIS A:305 , GLU A:323 , NAG A:730 , BMA A:732 , HOH A:1142
BINDING SITE FOR RESIDUE NAG A 731
12
BC3
SOFTWARE
NAG A:731
BINDING SITE FOR RESIDUE BMA A 732
13
BC4
SOFTWARE
PRO A:355 , ASP A:356 , THR A:358 , ASN A:376 , VAL A:406 , NAG A:741 , HOH A:1092
BINDING SITE FOR RESIDUE NAG A 740
14
BC5
SOFTWARE
NAG A:740
BINDING SITE FOR RESIDUE NAG A 741
15
BC6
SOFTWARE
LYS A:386 , TYR A:391 , ASN A:396 , HOH A:1132 , HOH A:1311 , HOH A:1323 , HOH A:1360 , GLN B:530 , GLU B:533
BINDING SITE FOR RESIDUE NAG A 750
16
BC7
SOFTWARE
LEU A:167 , ASN A:201 , VAL A:217 , HOH A:836 , HOH A:1104
BINDING SITE FOR RESIDUE NAG A 760
17
BC8
SOFTWARE
ASN A:244 , ALA A:282 , ASP A:322 , HOH A:1039 , HOH A:1120 , HOH A:1308 , HOH A:1387 , ARG B:281 , HOH B:934
BINDING SITE FOR RESIDUE NDG A 770
18
BC9
SOFTWARE
GLU A:78 , ARG A:126 , ASN B:39 , ASN B:84
BINDING SITE FOR RESIDUE NAG B 700
19
DC3
SOFTWARE
ASP A:379 , ASN A:381 , HOH A:1284 , HOH A:1325 , LYS B:386 , TYR B:391 , ASN B:396 , HOH B:1217 , HOH B:1348
BINDING SITE FOR RESIDUE NAG B 750
20
DC5
SOFTWARE
HIS A:431 , CYS A:503 , HIS A:508
BINDING SITE FOR RESIDUE CU A 601
21
DC6
SOFTWARE
HIS A:140 , HIS A:436 , HIS A:502 , OXY A:620
BINDING SITE FOR RESIDUE CU A 602
22
DC7
SOFTWARE
HIS A:95 , TRP A:136 , HIS A:138 , HIS A:504 , OXY A:620
BINDING SITE FOR RESIDUE CU A 603
23
DC8
SOFTWARE
HIS A:93 , HIS A:95 , HIS A:434 , HIS A:436 , CL A:610 , OXY A:620
BINDING SITE FOR RESIDUE CU A 604
24
DC9
SOFTWARE
HIS A:93 , HIS A:95 , GLY A:96 , HIS A:434 , CU A:604
BINDING SITE FOR RESIDUE CL A 610
25
EC1
SOFTWARE
ARG A:128 , ARG A:130 , ARG B:492
BINDING SITE FOR RESIDUE SO4 A 800
26
EC2
SOFTWARE
ARG A:520 , ARG A:527 , ARG B:520 , ARG B:527 , HOH B:825 , HOH B:981
BINDING SITE FOR RESIDUE SO4 A 801
27
EC8
SOFTWARE
ARG A:492 , HOH A:1345 , ARG B:128 , ARG B:130 , HOH B:1201
BINDING SITE FOR RESIDUE SO4 B 800
28
EC9
SOFTWARE
HIS A:93 , HIS A:95 , HIS A:138 , HIS A:140 , HIS A:434 , HIS A:436 , HIS A:502 , HIS A:504 , CU A:602 , CU A:603 , CU A:604 , HOH A:1053
BINDING SITE FOR RESIDUE OXY A 620
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: MULTICOPPER_OXIDASE1 (A:497-517)
2: MULTICOPPER_OXIDASE2 (A:502-513)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTICOPPER_OXIDASE1
PS00079
Multicopper oxidases signature 1.
LAC1_MELAO
547-567
1
A:497-517
-
2
MULTICOPPER_OXIDASE2
PS00080
Multicopper oxidases signature 2.
LAC1_MELAO
552-563
1
A:502-513
-
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2ih8a1 (A:1-162)
1b: SCOP_d2ih8a2 (A:163-343)
1c: SCOP_d2ih8a3 (A:344-559)
1d: SCOP_d2ih8b1 (B:1-162)
1e: SCOP_d2ih8b2 (B:163-343)
1f: SCOP_d2ih8b3 (B:344-559)
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Classes
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)
(
)
Folds
(
)
(
)
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(
)
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Multidomain cupredoxins
(146)
Protein domain
:
Laccase
(13)
Fungus (Melanocarpus albomyces) [TaxId: 204285]
(8)
1a
d2ih8a1
A:1-162
1b
d2ih8a2
A:163-343
1c
d2ih8a3
A:344-559
1d
d2ih8b1
B:1-162
1e
d2ih8b2
B:163-343
1f
d2ih8b3
B:344-559
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2ih8A01 (A:1-158)
1b: CATH_2ih8A02 (A:159-342)
1c: CATH_2ih8B02 (B:159-342)
1d: CATH_2ih8A03 (A:343-559)
1e: CATH_2ih8B03 (B:343-559)
1f: CATH_2ih8B01 (B:1-158)
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Classes
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Architectures
(
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Melanocarpus albomyces. Organism_taxid: 204285. Strain: vtt d-96490.
(7)
1a
2ih8A01
A:1-158
1b
2ih8A02
A:159-342
1c
2ih8B02
B:159-342
1d
2ih8A03
A:343-559
1e
2ih8B03
B:343-559
1f
2ih8B01
B:1-158
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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