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2IGN
Asym. Unit
Info
Asym.Unit (850 KB)
Biol.Unit 1 (426 KB)
Biol.Unit 2 (423 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RECOMBINANT PYRANOSE 2-OXIDASE H167A MUTANT
Authors
:
C. Divne
Date
:
22 Sep 06 (Deposition) - 10 Oct 06 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Oxidoreductase, Gmc Oxidoreductase, H167A Mutant, Rossmann Fold, Phbh Fold, Homotetramer, 8-Alpha-(N3) Histidyl Flavinylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Kujawa, H. Ebner, C. Leitner, B. M. Hallberg, M. Prongjit, J. Sucharitakul, R. Ludwig, U. Rudsander, C. Peterbauer, P. Chaiyen, D. Haltrich, C. Divne
Structural Basis For Substrate Binding And Regioselective Oxidation Of Monosaccharides At C3 By Pyranose 2-Oxidase.
J. Biol. Chem. V. 281 35104 2006
[
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
1e: FLAVIN-ADENINE DINUCLEOTIDE (FADe)
1f: FLAVIN-ADENINE DINUCLEOTIDE (FADf)
1g: FLAVIN-ADENINE DINUCLEOTIDE (FADg)
1h: FLAVIN-ADENINE DINUCLEOTIDE (FADh)
2a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
2b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
2c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
2d: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESd)
2e: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESe)
2f: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESf)
2g: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESg)
2h: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
8
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
MES
8
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:52 , GLY A:53 , GLY A:55 , PRO A:56 , ILE A:57 , ASP A:76 , ILE A:77 , THR A:158 , ARG A:159 , VAL A:160 , GLY A:163 , MET A:164 , ALA A:167 , TRP A:168 , THR A:169 , CYS A:170 , ALA A:171 , VAL A:281 , CYS A:283 , THR A:319 , ALA A:320 , HIS A:324 , LEU A:547 , ASN A:593 , THR A:595 , HOH A:8006 , HOH A:8007 , HOH A:8012 , HOH A:8018 , HOH A:8037 , HOH A:8050 , HOH A:8064 , HOH A:8077 , HOH A:8088 , HOH A:8107 , HOH A:8347
BINDING SITE FOR RESIDUE FAD A 7001
02
AC2
SOFTWARE
VAL B:52 , GLY B:53 , GLY B:55 , PRO B:56 , ILE B:57 , ASP B:76 , ILE B:77 , THR B:158 , ARG B:159 , VAL B:160 , GLY B:163 , MET B:164 , TRP B:168 , THR B:169 , CYS B:170 , ALA B:171 , VAL B:281 , CYS B:283 , THR B:319 , ALA B:320 , HIS B:324 , LEU B:547 , ASN B:593 , THR B:595 , HOH B:8007 , HOH B:8012 , HOH B:8035 , HOH B:8037 , HOH B:8061 , HOH B:8071 , HOH B:8076 , HOH B:8093 , HOH B:8141 , HOH B:8206 , HOH B:8639
BINDING SITE FOR RESIDUE FAD B 7002
03
AC3
SOFTWARE
VAL D:52 , GLY D:53 , GLY D:55 , PRO D:56 , ILE D:57 , ASP D:76 , ILE D:77 , THR D:158 , ARG D:159 , VAL D:160 , GLY D:163 , MET D:164 , ALA D:167 , TRP D:168 , THR D:169 , CYS D:170 , ALA D:171 , VAL D:281 , CYS D:283 , THR D:319 , ALA D:320 , HIS D:324 , LEU D:547 , ASN D:593 , THR D:595 , HOH D:8012 , HOH D:8017 , HOH D:8030 , HOH D:8074 , HOH D:8102 , HOH D:8103 , HOH D:8107 , HOH D:8111 , HOH D:8124 , HOH D:8150
BINDING SITE FOR RESIDUE FAD D 7003
04
AC4
SOFTWARE
VAL C:52 , GLY C:53 , GLY C:55 , PRO C:56 , ILE C:57 , ASP C:76 , ILE C:77 , THR C:158 , ARG C:159 , VAL C:160 , GLY C:163 , MET C:164 , ALA C:167 , TRP C:168 , THR C:169 , CYS C:170 , ALA C:171 , VAL C:281 , CYS C:283 , THR C:319 , ALA C:320 , HIS C:324 , LEU C:547 , ASN C:593 , THR C:595 , HOH C:8024 , HOH C:8025 , HOH C:8036 , HOH C:8046 , HOH C:8066 , HOH C:8069 , HOH C:8106 , HOH C:8117 , HOH C:8119 , HOH C:8176 , HOH C:8210
BINDING SITE FOR RESIDUE FAD C 7004
05
AC5
SOFTWARE
VAL E:52 , GLY E:53 , GLY E:55 , PRO E:56 , ILE E:57 , ASP E:76 , ILE E:77 , THR E:158 , ARG E:159 , VAL E:160 , GLY E:163 , MET E:164 , TRP E:168 , THR E:169 , CYS E:170 , ALA E:171 , VAL E:281 , CYS E:283 , THR E:319 , ALA E:320 , HIS E:324 , LEU E:547 , ASN E:593 , THR E:595 , HOH E:8012 , HOH E:8018 , HOH E:8034 , HOH E:8037 , HOH E:8072 , HOH E:8105 , HOH E:8106 , HOH E:8122 , HOH E:8160 , HOH E:8211 , HOH E:8269
BINDING SITE FOR RESIDUE FAD E 7005
06
AC6
SOFTWARE
VAL F:52 , GLY F:53 , GLY F:55 , PRO F:56 , ILE F:57 , ASP F:76 , ILE F:77 , THR F:158 , ARG F:159 , VAL F:160 , GLY F:163 , MET F:164 , TRP F:168 , THR F:169 , CYS F:170 , ALA F:171 , VAL F:281 , CYS F:283 , THR F:319 , ALA F:320 , HIS F:324 , LEU F:547 , ASN F:593 , THR F:595 , HOH F:8008 , HOH F:8029 , HOH F:8039 , HOH F:8051 , HOH F:8054 , HOH F:8058 , HOH F:8075 , HOH F:8098 , HOH F:8112 , HOH F:8129 , HOH F:8155
BINDING SITE FOR RESIDUE FAD F 7006
07
AC7
SOFTWARE
VAL H:52 , GLY H:53 , GLY H:55 , PRO H:56 , ILE H:57 , ASP H:76 , ILE H:77 , ILE H:107 , THR H:158 , ARG H:159 , VAL H:160 , GLY H:163 , MET H:164 , ALA H:167 , TRP H:168 , THR H:169 , CYS H:170 , ALA H:171 , VAL H:281 , CYS H:283 , THR H:319 , ALA H:320 , HIS H:324 , LEU H:547 , ASN H:593 , THR H:595 , HOH H:8006 , HOH H:8020 , HOH H:8027 , HOH H:8038 , HOH H:8041 , HOH H:8065 , HOH H:8104 , HOH H:8171 , HOH H:8173 , HOH H:8176 , HOH H:8198
BINDING SITE FOR RESIDUE FAD H 7007
08
AC8
SOFTWARE
GLY G:53 , GLY G:55 , PRO G:56 , ILE G:57 , ASP G:76 , ILE G:77 , THR G:158 , ARG G:159 , VAL G:160 , GLY G:163 , MET G:164 , TRP G:168 , THR G:169 , CYS G:170 , ALA G:171 , VAL G:281 , CYS G:283 , THR G:319 , ALA G:320 , HIS G:324 , LEU G:547 , ASN G:593 , THR G:595 , HOH G:8009 , HOH G:8012 , HOH G:8028 , HOH G:8030 , HOH G:8066 , HOH G:8111 , HOH G:8123 , HOH G:8140 , HOH G:8151 , HOH G:8187 , HOH G:8228
BINDING SITE FOR RESIDUE FAD G 7008
09
AC9
SOFTWARE
SER E:462 , ILE E:463 , ASP E:464 , LEU F:121 , VAL F:122 , VAL F:123 , TRP F:131 , GLN F:132 , ALA F:133 , PHE F:137 , ARG F:139 , HOH F:8407 , LEU G:149
BINDING SITE FOR RESIDUE MES F 8001
10
BC1
SOFTWARE
LEU A:121 , VAL A:122 , VAL A:123 , TRP A:131 , GLN A:132 , ALA A:133 , PHE A:137 , ARG A:139 , HOH A:8414 , HOH A:8633 , SER B:462 , ILE B:463 , ASP B:464 , LEU D:149
BINDING SITE FOR RESIDUE MES A 8002
11
BC2
SOFTWARE
SER A:462 , ILE A:463 , ASP A:464 , LEU B:121 , VAL B:122 , VAL B:123 , TRP B:131 , GLN B:132 , ALA B:133 , PHE B:137 , ARG B:139 , HOH B:8503 , HOH B:8607 , LEU C:149
BINDING SITE FOR RESIDUE MES B 8003
12
BC3
SOFTWARE
LEU E:149 , SER G:462 , ILE G:463 , ASP G:464 , LEU H:121 , VAL H:123 , TRP H:131 , GLN H:132 , ALA H:133 , PHE H:137 , ARG H:139 , HOH H:8306
BINDING SITE FOR RESIDUE MES H 8004
13
BC4
SOFTWARE
LEU A:149 , SER C:462 , ILE C:463 , ASP C:464 , LEU D:121 , VAL D:122 , VAL D:123 , TRP D:131 , GLN D:132 , ALA D:133 , PHE D:137 , ARG D:139 , HOH D:8310
BINDING SITE FOR RESIDUE MES D 8005
14
BC5
SOFTWARE
LEU F:149 , LEU G:121 , VAL G:122 , VAL G:123 , TRP G:131 , GLN G:132 , ALA G:133 , PHE G:137 , ARG G:139 , HOH G:8371 , SER H:462 , ILE H:463 , ASP H:464
BINDING SITE FOR RESIDUE MES G 8006
15
BC6
SOFTWARE
LEU E:121 , VAL E:122 , VAL E:123 , TRP E:131 , GLN E:132 , ALA E:133 , PHE E:136 , PHE E:137 , ARG E:139 , HOH E:8255 , HOH E:8344 , SER F:462 , ILE F:463 , ASP F:464 , HOH F:8327 , LEU H:149
BINDING SITE FOR RESIDUE MES E 8007
16
BC7
SOFTWARE
LEU B:149 , LEU C:121 , VAL C:122 , VAL C:123 , TRP C:131 , GLN C:132 , ALA C:133 , PHE C:137 , ARG C:139 , HOH C:8251 , SER D:462 , ILE D:463 , ASP D:464 , HOH D:8439
BINDING SITE FOR RESIDUE MES C 8008
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d2igna2 (A:355-552)
1b: SCOP_d2ignb2 (B:355-552)
1c: SCOP_d2ignc2 (C:355-552)
1d: SCOP_d2ignd2 (D:355-552)
1e: SCOP_d2igne2 (E:355-552)
1f: SCOP_d2ignf2 (F:355-552)
1g: SCOP_d2igng2 (G:355-552)
1h: SCOP_d2ignh2 (H:355-552)
2a: SCOP_d2igna1 (A:43-354,A:553-619)
2b: SCOP_d2ignb1 (B:43-354,B:553-619)
2c: SCOP_d2ignc1 (C:43-354,C:553-619)
2d: SCOP_d2ignd1 (D:43-354,D:553-619)
2e: SCOP_d2igne1 (E:43-354,E:553-619)
2f: SCOP_d2ignf1 (F:43-354,F:553-619)
2g: SCOP_d2igng1 (G:43-354,G:553-619)
2h: SCOP_d2ignh1 (H:43-354,H:553-619)
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(
)
(
)
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(
)
(
)
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(
)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
GMC oxidoreductases
(30)
Protein domain
:
Pyranose 2-oxidase
(5)
White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
(5)
1a
d2igna2
A:355-552
1b
d2ignb2
B:355-552
1c
d2ignc2
C:355-552
1d
d2ignd2
D:355-552
1e
d2igne2
E:355-552
1f
d2ignf2
F:355-552
1g
d2igng2
G:355-552
1h
d2ignh2
H:355-552
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD-linked reductases, N-terminal domain
(156)
Protein domain
:
Pyranose 2-oxidase
(5)
White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
(5)
2a
d2igna1
A:43-354,A:553-619
2b
d2ignb1
B:43-354,B:553-619
2c
d2ignc1
C:43-354,C:553-619
2d
d2ignd1
D:43-354,D:553-619
2e
d2igne1
E:43-354,E:553-619
2f
d2ignf1
F:43-354,F:553-619
2g
d2igng1
G:43-354,G:553-619
2h
d2ignh1
H:43-354,H:553-619
[
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (850 KB)
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