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2IGE
Theor. Model
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Theoretical Model (98 KB)
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(1)
Title
:
THE NATURE AND IMPORTANCE OF THE INTER-EPSILON CHAIN DISULPHIDE BONDS IN HUMAN IGE
Authors
:
E. A. Padlan, B. A. Helm
Date
:
02 Oct 90 (Deposition) - 15 Jul 92 (Release) - 01 Apr 03 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,B
Keywords
:
Immunoglobulin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. A. Helm, Y. Ling, C. Teale, E. A. Padlan, M. Bruggemann
The Nature And Importance Of The Inter-Epsilon Chain Disulfide Bonds In Human Ige.
Eur. J. Immunol. V. 21 1543 1991
(for further references see the
PDB file header
)
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Hetero Components
(4, 18)
Info
All Hetero Components
1a: ALPHA-L-FUCOSE (FUCa)
1b: ALPHA-L-FUCOSE (FUCb)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
2
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
3
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_003885 (W478L, chain A/B, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_003885
W
359
L
IGHE_HUMAN
Polymorphism
---
A/B
W
478
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (-|A:416-422,B:416-422|A:522-528,B:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGHE_HUMAN
83-89
297-303
403-409
4
-
A:416-422
B:416-422
A:522-528
B:522-528
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Exons
(3, 6)
Info
All Exons
Exon 1.2 (A:229-330 | B:229-330)
Exon 1.3 (A:330-438 | B:330-438)
Exon 1.4 (A:438-547 | B:438-547)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000390541
1
ENSE00001935719
chr14:
106068065-106067756
310
IGHE_HUMAN
1-104
104
0
-
-
1.2
ENST00000390541
2
ENSE00001508179
chr14:
106067548-106067228
321
IGHE_HUMAN
104-211
108
2
A:229-330
B:229-330
103
103
1.3
ENST00000390541
3
ENSE00001508174
chr14:
106067141-106066818
324
IGHE_HUMAN
211-319
109
2
A:330-438
B:330-438
109
109
1.4
ENST00000390541
4
ENSE00001943927
chr14:
106066734-106066278
457
IGHE_HUMAN
319-428
110
2
A:438-547
B:438-547
110
110
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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