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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'Exon' information from database.
2IFD
Asym. Unit
Info
Asym.Unit (38 KB)
Biol.Unit 1 (34 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A REMOTE BINDING SITE MUTANT, R492L, OF CDC25B PHOSPHATASE CATALYTIC DOMAIN
Authors
:
J. Rudolph, G. Buhrman
Date
:
20 Sep 06 (Deposition) - 27 Feb 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Phosphatase, Dual Specificity, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Sohn, G. Buhrman, J. Rudolph
Kinetic And Structural Studies Of Specific Protein-Protein Interactions In Substrate Catalysis By Cdc25B Phosphatase.
Biochemistry V. 46 807 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:64 , HOH A:105 , CYS A:473 , GLU A:474 , PHE A:475 , SER A:476 , SER A:477 , GLU A:478 , ARG A:479
BINDING SITE FOR RESIDUE SO4 A 551
2
AC2
SOFTWARE
HOH A:13 , HOH A:65 , GLU A:446 , ARG A:548
BINDING SITE FOR RESIDUE CL A 201
3
AC3
SOFTWARE
LYS A:394 , LYS A:509
BINDING SITE FOR RESIDUE CL A 202
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_020933 (E534K, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020933
E
548
K
MPIP2_HUMAN
Polymorphism
11570019
A
E
534
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RHODANESE_3 (A:417-524)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHODANESE_3
PS50206
Rhodanese domain profile.
MPIP2_HUMAN
431-538
1
A:417-524
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Exons
(6, 6)
Info
All Exons
Exon 1.10 (A:376-384)
Exon 1.11c (A:385-405)
Exon 1.12b (A:406-438)
Exon 1.13c (A:439-483)
Exon 1.14 (A:483-520)
Exon 1.15d (A:521-550)
View:
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Label:
All Exon Boundaries
1: Boundary 1.9/1.10
2: Boundary 1.10/1.11c
3: Boundary 1.11c/1.12b
4: Boundary 1.12b/1.13c
5: Boundary 1.13c/1.14
6: Boundary 1.14/1.15d
7: Boundary 1.15d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000245960
1b
ENSE00001353605
chr20:
3776482-3777378
897
MPIP2_HUMAN
1-67
67
0
-
-
1.2a
ENST00000245960
2a
ENSE00000858842
chr20:
3778269-3778396
128
MPIP2_HUMAN
67-110
44
0
-
-
1.3
ENST00000245960
3
ENSE00000858844
chr20:
3779059-3779110
52
MPIP2_HUMAN
110-127
18
0
-
-
1.4
ENST00000245960
4
ENSE00000858846
chr20:
3780935-3780976
42
MPIP2_HUMAN
127-141
15
0
-
-
1.5
ENST00000245960
5
ENSE00000858850
chr20:
3781109-3781145
37
MPIP2_HUMAN
141-153
13
0
-
-
1.6a
ENST00000245960
6a
ENSE00000657911
chr20:
3781390-3781512
123
MPIP2_HUMAN
154-194
41
0
-
-
1.6c
ENST00000245960
6c
ENSE00000858854
chr20:
3781618-3781740
123
MPIP2_HUMAN
195-235
41
0
-
-
1.7
ENST00000245960
7
ENSE00000657912
chr20:
3781901-3782035
135
MPIP2_HUMAN
236-280
45
0
-
-
1.8b
ENST00000245960
8b
ENSE00000858860
chr20:
3782369-3782449
81
MPIP2_HUMAN
281-307
27
0
-
-
1.9
ENST00000245960
9
ENSE00001482099
chr20:
3782571-3782747
177
MPIP2_HUMAN
308-366
59
0
-
-
1.10
ENST00000245960
10
ENSE00001190140
chr20:
3782928-3783023
96
MPIP2_HUMAN
367-398
32
1
A:376-384
9
1.11c
ENST00000245960
11c
ENSE00001658249
chr20:
3783557-3783619
63
MPIP2_HUMAN
399-419
21
1
A:385-405
21
1.12b
ENST00000245960
12b
ENSE00001645639
chr20:
3783755-3783853
99
MPIP2_HUMAN
420-452
33
1
A:406-438
33
1.13c
ENST00000245960
13c
ENSE00001714978
chr20:
3784051-3784184
134
MPIP2_HUMAN
453-497
45
1
A:439-483
45
1.14
ENST00000245960
14
ENSE00001664388
chr20:
3785216-3785327
112
MPIP2_HUMAN
497-534
38
1
A:483-520
38
1.15d
ENST00000245960
15d
ENSE00001869849
chr20:
3785468-3786762
1295
MPIP2_HUMAN
535-580
46
1
A:521-550
30
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2ifda_ (A:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Rhodanese/Cell cycle control phosphatase
(39)
Superfamily
:
Rhodanese/Cell cycle control phosphatase
(39)
Family
:
Cell cycle control phosphatase, catalytic domain
(16)
Protein domain
:
CDC25b
(12)
Human (Homo sapiens) [TaxId: 9606]
(12)
1a
d2ifda_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2ifdA00 (A:376-550)
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)
Topologies
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Oxidized Rhodanese; domain 1
(42)
Homologous Superfamily
:
Oxidized Rhodanese, domain 1
(42)
Human (Homo sapiens)
(15)
1a
2ifdA00
A:376-550
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Asym.Unit (38 KB)
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