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2IDH
Asym. Unit
Info
Asym.Unit (52 KB)
Biol.Unit 1 (7 KB)
Biol.Unit 2 (7 KB)
Biol.Unit 3 (7 KB)
Biol.Unit 4 (8 KB)
Biol.Unit 5 (7 KB)
Biol.Unit 6 (7 KB)
Biol.Unit 7 (7 KB)
Biol.Unit 8 (8 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN FE65 WW DOMAIN
Authors
:
M. Meiyappan, G. Birrane, J. A. A. Ladias
Date
:
15 Sep 06 (Deposition) - 10 Jul 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.28
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Keywords
:
Ww Domain, Fe65, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Meiyappan, G. Birrane, J. A. Ladias
Structural Basis For Polyproline Recognition By The Fe65 Ww Domain.
J. Mol. Biol. V. 372 970 2007
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 9)
Info
All Hetero Components
1a: TETRAETHYLENE GLYCOL (PG4a)
1b: TETRAETHYLENE GLYCOL (PG4b)
1c: TETRAETHYLENE GLYCOL (PG4c)
1d: TETRAETHYLENE GLYCOL (PG4d)
1e: TETRAETHYLENE GLYCOL (PG4e)
1f: TETRAETHYLENE GLYCOL (PG4f)
1g: TETRAETHYLENE GLYCOL (PG4g)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PG4
7
Ligand/Ion
TETRAETHYLENE GLYCOL
2
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:261 , GLN A:263
BINDING SITE FOR RESIDUE SO4 A 202
2
AC2
SOFTWARE
ARG C:261 , ARG D:261 , GLN D:263
BINDING SITE FOR RESIDUE SO4 D 201
3
AC3
SOFTWARE
TYR A:269 , MET B:260 , TRP B:271
BINDING SITE FOR RESIDUE PG4 A 302
4
AC4
SOFTWARE
GLN C:279
BINDING SITE FOR RESIDUE PG4 C 303
5
AC5
SOFTWARE
PRO B:274 , MET C:260 , TRP D:271 , THR D:278
BINDING SITE FOR RESIDUE PG4 D 305
6
AC6
SOFTWARE
TRP A:280 , GLN E:279 , PRO E:283
BINDING SITE FOR RESIDUE PG4 E 301
7
AC7
SOFTWARE
MET E:260 , TYR F:269 , TRP F:271
BINDING SITE FOR RESIDUE PG4 F 306
8
AC8
SOFTWARE
TYR G:269 , TRP G:271 , MET H:260
BINDING SITE FOR RESIDUE PG4 H 304
9
AC9
SOFTWARE
TRP G:280 , GLN H:279
BINDING SITE FOR RESIDUE PG4 H 307
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 10)
Info
All PROSITE Patterns/Profiles
1: WW_DOMAIN_2 (D:253-285,H:253-284)
2: WW_DOMAIN_1 (A:259-283,B:259-283,C:259-283,D:25...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
WW_DOMAIN_2
PS50020
WW/rsp5/WWP domain profile.
APBB1_HUMAN
253-285
2
D:253-285
H:253-284
2
WW_DOMAIN_1
PS01159
WW/rsp5/WWP domain signature.
APBB1_HUMAN
259-283
8
A:259-283
B:259-283
C:259-283
D:259-283
E:259-283
F:259-283
G:259-283
H:259-283
[
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]
Exons
(1, 8)
Info
All Exons
Exon 1.7c (A:254-283 | B:254-284 | C:254-283 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3b/1.7c
2: Boundary 1.7c/1.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000389906
2b
ENSE00001526385
chr11:
6440300-6440215
86
APBB1_HUMAN
-
0
0
-
-
1.3b
ENST00000389906
3b
ENSE00001291677
chr11:
6432591-6431857
735
APBB1_HUMAN
1-241
241
0
-
-
1.7c
ENST00000389906
7c
ENSE00001102023
chr11:
6425052-6424877
176
APBB1_HUMAN
241-299
59
8
A:254-283
B:254-284
C:254-283
D:253-285
E:254-283
F:254-283
G:254-284
H:253-284
30
31
30
33
30
30
31
32
1.8
ENST00000389906
8
ENSE00001102020
chr11:
6424774-6424718
57
APBB1_HUMAN
300-318
19
0
-
-
1.9
ENST00000389906
9
ENSE00001101992
chr11:
6424634-6424549
86
APBB1_HUMAN
319-347
29
0
-
-
1.10
ENST00000389906
10
ENSE00001101995
chr11:
6424438-6424375
64
APBB1_HUMAN
347-368
22
0
-
-
1.11c
ENST00000389906
11c
ENSE00001102016
chr11:
6423955-6423806
150
APBB1_HUMAN
369-418
50
0
-
-
1.11e
ENST00000389906
11e
ENSE00001101999
chr11:
6423439-6423312
128
APBB1_HUMAN
419-461
43
0
-
-
1.12b
ENST00000389906
12b
ENSE00001102005
chr11:
6422924-6422804
121
APBB1_HUMAN
461-501
41
0
-
-
1.12j
ENST00000389906
12j
ENSE00001101974
chr11:
6422659-6422575
85
APBB1_HUMAN
502-530
29
0
-
-
1.12l
ENST00000389906
12l
ENSE00001102013
chr11:
6422302-6422219
84
APBB1_HUMAN
530-558
29
0
-
-
1.14c
ENST00000389906
14c
ENSE00001101981
chr11:
6417445-6417330
116
APBB1_HUMAN
558-596
39
0
-
-
1.14d
ENST00000389906
14d
ENSE00001101989
chr11:
6417192-6417016
177
APBB1_HUMAN
597-655
59
0
-
-
1.14i
ENST00000389906
14i
ENSE00001301318
chr11:
6416931-6416355
577
APBB1_HUMAN
656-710
55
0
-
-
[
close EXON info
]
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2idha_ (A:)
1b: SCOP_d2idhb_ (B:)
1c: SCOP_d2idhc_ (C:)
1d: SCOP_d2idhd_ (D:)
1e: SCOP_d2idhe_ (E:)
1f: SCOP_d2idhf_ (F:)
1g: SCOP_d2idhg_ (G:)
1h: SCOP_d2idhh_ (H:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
WW domain-like
(101)
Superfamily
:
WW domain
(80)
Family
:
WW domain
(69)
Protein domain
:
Amyloid beta A4 precursor protein-binding family B member 1, APBB1
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2idha_
A:
1b
d2idhb_
B:
1c
d2idhc_
C:
1d
d2idhd_
D:
1e
d2idhe_
E:
1f
d2idhf_
F:
1g
d2idhg_
G:
1h
d2idhh_
H:
[
close SCOP info
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Protein & NOT PROSITE
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Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
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Asym.Unit (52 KB)
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