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2ICY
Biol. Unit 1
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Asym.Unit (330 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (86 KB)
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Title
:
CRYSTAL STRUCTURE OF A PUTATIVE UDP-GLUCOSE PYROPHOSPHORYLASE FROM ARABIDOPSIS THALIANA WITH BOUND UDP-GLUCOSE
Authors
:
J. G. Mccoy, G. E. Wesenberg, G. N. Phillips Jr. , E. Bitto, C. A. Bingman, Center For Eukaryotic Structural Genomics (Cesg
Date
:
13 Sep 06 (Deposition) - 03 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.64
Chains
:
Asym. Unit : A,B (2 x)
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
At3G03250, Udp, Putative Udp-Glucose Pyrophosphorylase, Structural Genomics Functional Follow-Up Study, Structural Genomics, Protein Structure Initiative, Psi, Cesg, Center For Eukaryotic Structural Genomics, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. G. Mccoy, E. Bitto, C. A. Bingman, G. E. Wesenberg, R. M. Bannen, D. A. Kondrashov, G. N. Phillips Jr.
Structure And Dynamics Of Udp-Glucose Pyrophosphorylase From Arabidopsis Thaliana With Bound Udp-Glucose And Utp.
J. Mol. Biol. V. 366 830 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: DIMETHYL SULFOXIDE (DMSa)
2a: URIDINE-5'-MONOPHOSPHATE (U5Pa)
3a: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGa)
3b: URIDINE-5'-DIPHOSPHATE-GLUCOSE (UPGb)
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No.
Name
Count
Type
Full Name
1
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
2
U5P
-1
Ligand/Ion
URIDINE-5'-MONOPHOSPHATE
3
UPG
1
Ligand/Ion
URIDINE-5'-DIPHOSPHATE-GLUCOSE
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:157 , HIS A:158 , THR A:159 , LYS A:204
BINDING SITE FOR RESIDUE DMS A 900
2
AC2
SOFTWARE
LEU A:85 , GLY A:87 , GLY A:88 , MET A:134 , GLN A:162 , PRO A:189 , GLY A:191 , HIS A:192 , ASN A:220 , SER A:221 , ASN A:293 , THR A:294 , ASN A:295 , PHE A:356 , HOH A:927 , HOH A:962 , HOH A:1049 , HOH A:1138 , HOH A:1192
BINDING SITE FOR RESIDUE UPG A 901
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SAPs(SNPs)/Variants
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Exons
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2icya1 (A:384-466)
1b: SCOP_d2icyb1 (B:384-469)
2a: SCOP_d2icya2 (A:5-383)
2b: SCOP_d2icyb2 (B:7-383)
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Class
:
All beta proteins
(24004)
Fold
:
Single-stranded left-handed beta-helix
(154)
Superfamily
:
Trimeric LpxA-like enzymes
(147)
Family
:
GlmU C-terminal domain-like
(22)
Protein domain
:
UDP-glucose pyrophosphorylase 2 (UDPGP 2)
(4)
Thale cress (Arabidopsis thaliana) [TaxId: 3702]
(4)
1a
d2icya1
A:384-466
1b
d2icyb1
B:384-469
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
UDP-glucose pyrophosphorylase
(25)
Protein domain
:
UDP-glucose pyrophosphorylase 2 (UDPGP 2)
(4)
Thale cress (Arabidopsis thaliana) [TaxId: 3702]
(4)
2a
d2icya2
A:5-383
2b
d2icyb2
B:7-383
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (330 KB)
Header - Asym.Unit
Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
Biol.Unit 2 (86 KB)
Header - Biol.Unit 2
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