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2IBN
Asym. Unit
Info
Asym.Unit (102 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (48 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN MYO-INOSITOL OXYGENASE (MIOX)
Authors
:
B. M. Hallberg, R. D. Busam, C. Arrowsmith, H. Berglund, R. Collins, A. Edwards, M. Ehn, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, M. Hogbom, L. Holmberg-Schiavone, I. Johansson, T. Karlberg, T. Kotenyova, P. Nilsson-Ehle, P. Nordlund, T. Nyman, D. Ogg, J. Sagemark, P. Stenmark, M. Sundstrom, J. Uppenberg, S. Van Den Berg, J. Weigelt, A. G. Thorsell, C. Persson, Structural Genomics Consortium (Sgc)
Date
:
11 Sep 06 (Deposition) - 17 Oct 06 (Release) - 17 Jun 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Reductase, Inositol, Diiron, Structural Genomics, Structural Genomics Consortium, Sgc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. G. Thorsell, C. Persson, N. Voevodskaya, R. D. Busam, M. Hammarstrom, S. Graslund, A. Graslund, B. M. Hallberg
Structural And Biophysical Characterization Of Human Myo-Inositol Oxygenase
J. Biol. Chem. V. 283 15209 2008
(for further references see the
PDB file header
)
[
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]
Hetero Components
(5, 30)
Info
All Hetero Components
1a: CYSTEINE (CYSa)
1b: CYSTEINE (CYSb)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
2d: FE (III) ION (FEd)
3a: (2S,3R,4R,5S,6S)-2,3,4,5,6-PENTAHY... (I1Na)
3b: (2S,3R,4R,5S,6S)-2,3,4,5,6-PENTAHY... (I1Nb)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
4t: SELENOMETHIONINE (MSEt)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CYS
2
Mod. Amino Acid
CYSTEINE
2
FE
4
Ligand/Ion
FE (III) ION
3
I1N
2
Ligand/Ion
(2S,3R,4R,5S,6S)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXANONE
4
MSE
20
Mod. Amino Acid
SELENOMETHIONINE
5
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:98 , HIS A:123 , ASP A:124 , ASP A:253 , HOH A:737 , HOH A:812
BINDING SITE FOR RESIDUE FE A 703
02
AC2
SOFTWARE
ASP A:124 , HIS A:194 , HIS A:220 , I1N A:710 , HOH A:812
BINDING SITE FOR RESIDUE FE A 704
03
AC3
SOFTWARE
HIS B:98 , HIS B:123 , ASP B:124 , ASP B:253 , HOH B:782 , HOH B:807
BINDING SITE FOR RESIDUE FE B 705
04
AC4
SOFTWARE
ASP B:124 , HIS B:194 , HIS B:220 , I1N B:709 , HOH B:807
BINDING SITE FOR RESIDUE FE B 706
05
AC5
SOFTWARE
ARG A:229 , ARG A:247 , HOH A:929 , HOH A:962
BINDING SITE FOR RESIDUE SO4 A 701
06
AC6
SOFTWARE
ARG B:229 , HOH B:845 , HOH B:889 , HOH B:945 , HOH B:971
BINDING SITE FOR RESIDUE SO4 B 702
07
AC7
SOFTWARE
ASP A:85 , SER A:87 , ASP A:124 , LYS A:127 , VAL A:140 , GLY A:141 , ASP A:142 , HIS A:194 , HIS A:220 , SER A:221 , TYR A:223 , FE A:704 , HOH A:737 , HOH A:755 , HOH A:812
BINDING SITE FOR RESIDUE I1N A 710
08
AC8
SOFTWARE
ASP B:85 , SER B:87 , ASP B:124 , LYS B:127 , VAL B:140 , GLY B:141 , ASP B:142 , HIS B:194 , HIS B:220 , SER B:221 , FE B:706 , HOH B:782 , HOH B:807 , HOH B:972
BINDING SITE FOR RESIDUE I1N B 709
09
AC9
SOFTWARE
ASP B:112 , LYS B:113 , TRP B:225 , ARG B:229 , GLN B:232 , CYS B:235 , SER B:236 , HOH B:744 , HOH B:929
BINDING SITE FOR RESIDUE CYS B 707
10
BC1
SOFTWARE
ASP A:112 , LYS A:113 , TRP A:225 , ARG A:229 , GLN A:232 , CYS A:235 , SER A:236 , HOH A:715 , HOH A:927
BINDING SITE FOR RESIDUE CYS A 708
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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]
Exons
(8, 16)
Info
All Exons
Exon 1.3 (A:36-59 (gaps) | B:36-59 (gaps))
Exon 1.4 (A:60-114 (gaps) | B:60-114 (gaps))
Exon 1.5b (A:114-136 | B:114-136)
Exon 1.6a (A:137-173 | B:137-173)
Exon 1.7 (A:173-196 | B:173-196)
Exon 1.8 (A:196-212 | B:196-212)
Exon 1.9b (A:213-250 | B:213-250)
Exon 1.10c (A:250-285 (gaps) | B:250-285 (gaps...)
View:
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5b
4: Boundary 1.5b/1.6a
5: Boundary 1.6a/1.7
6: Boundary 1.7/1.8
7: Boundary 1.8/1.9b
8: Boundary 1.9b/1.10c
9: Boundary 1.10c/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000216075
1b
ENSE00001944909
chr22:
50925253-50925341
89
MIOX_HUMAN
1-5
5
0
-
-
1.2
ENST00000216075
2
ENSE00000878900
chr22:
50925814-50925894
81
MIOX_HUMAN
6-32
27
0
-
-
1.3
ENST00000216075
3
ENSE00000657697
chr22:
50926091-50926171
81
MIOX_HUMAN
33-59
27
2
A:36-59 (gaps)
B:36-59 (gaps)
27
27
1.4
ENST00000216075
4
ENSE00000657699
chr22:
50926315-50926477
163
MIOX_HUMAN
60-114
55
2
A:60-114 (gaps)
B:60-114 (gaps)
55
55
1.5b
ENST00000216075
5b
ENSE00000657701
chr22:
50926704-50926771
68
MIOX_HUMAN
114-136
23
2
A:114-136
B:114-136
23
23
1.6a
ENST00000216075
6a
ENSE00001774113
chr22:
50927469-50927578
110
MIOX_HUMAN
137-173
37
2
A:137-173
B:137-173
37
37
1.7
ENST00000216075
7
ENSE00001736525
chr22:
50927657-50927724
68
MIOX_HUMAN
173-196
24
2
A:173-196
B:173-196
24
24
1.8
ENST00000216075
8
ENSE00000657708
chr22:
50927826-50927875
50
MIOX_HUMAN
196-212
17
2
A:196-212
B:196-212
17
17
1.9b
ENST00000216075
9b
ENSE00000657711
chr22:
50927961-50928073
113
MIOX_HUMAN
213-250
38
2
A:213-250
B:213-250
38
38
1.10c
ENST00000216075
10c
ENSE00001690311
chr22:
50928177-50928483
307
MIOX_HUMAN
250-285
36
2
A:250-285 (gaps)
B:250-285 (gaps)
36
36
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ibna1 (A:37-285)
1b: SCOP_d2ibnb_ (B:)
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Protein Domains
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(
)
Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
HD-domain/PDEase-like
(204)
Superfamily
:
HD-domain/PDEase-like
(204)
Family
:
MioX-like
(3)
Protein domain
:
Myo-inositol oxygenase MioX
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2ibna1
A:37-285
1b
d2ibnb_
B:
[
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Atom Selection
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Nucleic
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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Asymmetric Unit 1
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