PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2I92
Theor. Model
Info
Theoretical Model (584 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(10 )
Title
:
MODEL OF THE STRUCTURE OF THE START DOMAINS OF HUMAN MLN64 IN COMPLEX WITH CHOLESTEROL
Authors
:
M. Murcia, J. D. Faraldo-Gomez, F. R. Maxfield, B. Roux
Date
:
04 Sep 06 (Deposition) - 19 Sep 06 (Release) - 05 Dec 06 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A (10 x)
Keywords
:
Steroidogenic Acute Regulatory Protein, Star, Star-Related Lipid Transfer, Start, Mln64, Cholesterol, Docking, Homology Modeling, Generalized-Born, Binding, Molecular Dynamics, Cholesterol Release
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Murcia, J. D. Faraldo-Gomez, F. R. Maxfield, B. Roux
Modeling The Structure Of The Start Domains Of Mln64 And Star Proteins In Complex With Cholesterol.
J. Lipid Res. V. 47 2614 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: CHOLESTEROL (CLRa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CLR
1
Ligand/Ion
CHOLESTEROL
[
close Hetero Component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: START (A:248-443)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
START
PS50848
START domain profile.
STAR3_HUMAN
248-443
1
A:248-443
[
close PROSITE info
]
Exons
(8, 8)
Info
All Exons
Exon 1.7b (A:230-234)
Exon 1.8a (A:235-265)
Exon 1.8c (A:266-286)
Exon 1.8d (A:287-318)
Exon 1.9 (A:319-345)
Exon 1.10 (A:345-380)
Exon 1.11a (A:380-411)
Exon 1.11e (A:412-443)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.6g/1.7b
2: Boundary 1.7b/1.8a
3: Boundary 1.8a/1.8c
4: Boundary 1.8c/1.8d
5: Boundary 1.8d/1.9
6: Boundary 1.9/1.10
7: Boundary 1.10/1.11a
8: Boundary 1.11a/1.11e
9: Boundary 1.11e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000336308
1a
ENSE00001057947
chr17:
37793318-37793484
167
STAR3_HUMAN
-
0
0
-
-
1.3a
ENST00000336308
3a
ENSE00002173531
chr17:
37809734-37810003
270
STAR3_HUMAN
1-73
73
0
-
-
1.4b
ENST00000336308
4b
ENSE00001057951
chr17:
37813261-37813338
78
STAR3_HUMAN
74-99
26
0
-
-
1.5b
ENST00000336308
5b
ENSE00001057946
chr17:
37814028-37814105
78
STAR3_HUMAN
100-125
26
0
-
-
1.6b
ENST00000336308
6b
ENSE00001057941
chr17:
37814226-37814279
54
STAR3_HUMAN
126-143
18
0
-
-
1.6d
ENST00000336308
6d
ENSE00001057943
chr17:
37814658-37814775
118
STAR3_HUMAN
144-183
40
0
-
-
1.6g
ENST00000336308
6g
ENSE00001057948
chr17:
37814975-37815073
99
STAR3_HUMAN
183-216
34
0
-
-
1.7b
ENST00000336308
7b
ENSE00001057950
chr17:
37815304-37815359
56
STAR3_HUMAN
216-234
19
1
A:230-234
5
1.8a
ENST00000336308
8a
ENSE00001057944
chr17:
37815714-37815806
93
STAR3_HUMAN
235-265
31
1
A:235-265
31
1.8c
ENST00000336308
8c
ENSE00000950629
chr17:
37816464-37816526
63
STAR3_HUMAN
266-286
21
1
A:266-286
21
1.8d
ENST00000336308
8d
ENSE00000950630
chr17:
37816684-37816779
96
STAR3_HUMAN
287-318
32
1
A:287-318
32
1.9
ENST00000336308
9
ENSE00000950631
chr17:
37817063-37817142
80
STAR3_HUMAN
319-345
27
1
A:319-345
27
1.10
ENST00000336308
10
ENSE00000950632
chr17:
37817234-37817338
105
STAR3_HUMAN
345-380
36
1
A:345-380
36
1.11a
ENST00000336308
11a
ENSE00001239164
chr17:
37818504-37818597
94
STAR3_HUMAN
380-411
32
1
A:380-411
32
1.11e
ENST00000336308
11e
ENSE00001844235
chr17:
37819057-37819737
681
STAR3_HUMAN
412-445
34
1
A:412-443
32
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Theoretical Model (584 KB)
Header - Theoretical Model
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2I92
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help