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Getting 'Exon' information from database.
2I7T
Asym. Unit
Info
Asym.Unit (75 KB)
Biol.Unit 1 (71 KB)
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(1)
Title
:
STRUCTURE OF HUMAN CPSF-73
Authors
:
C. R. Mandel, H. Zhang, L. Tong
Date
:
31 Aug 06 (Deposition) - 30 Jan 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Polyadenylation, Metallo-B-Lactamase, Pre-Mrna Processing, Artemis, V(D)J Recombination, Double-Strand Break Repair, Hydrolase, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. R. Mandel, S. Kaneko, H. Zhang, D. Gebauer, V. Vethantham, J. L. Manley, L. Tong
Polyadenylation Factor Cpsf-73 Is The Pre-Mrna 3'-End-Processing Endonuclease.
Nature V. 444 953 2006
(for further references see the
PDB file header
)
[
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]
Hetero Components
(2, 3)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
1
Ligand/Ion
SULFATE ION
2
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:75 , HIS A:76 , ASP A:179 , HIS A:418 , ZN A:482 , SO4 A:491
BINDING SITE FOR RESIDUE ZN A 481
2
AC2
SOFTWARE
HIS A:71 , HIS A:73 , HIS A:158 , ASP A:179 , ZN A:481 , SO4 A:491
BINDING SITE FOR RESIDUE ZN A 482
3
AC3
SOFTWARE
HIS A:73 , ASP A:75 , HIS A:158 , ASP A:179 , HIS A:396 , HIS A:418 , ZN A:481 , ZN A:482
BINDING SITE FOR RESIDUE SO4 A 491
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_037646 (E142G, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_037646
E
142
G
CPSF3_HUMAN
Polymorphism
17850770
A
E
142
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(11, 11)
Info
All Exons
Exon 1.1a (A:9-17)
Exon 1.2 (A:17-38)
Exon 1.3 (A:39-71)
Exon 1.4 (A:71-112)
Exon 1.5 (A:122-173)
Exon 1.6 (A:174-203 (gaps))
Exon 1.7 (A:204-254)
Exon 1.8 (A:254-312 (gaps))
Exon 1.9b (A:313-365)
Exon 1.10 (A:366-414)
Exon 1.11 (A:415-459)
View:
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9b
10: Boundary 1.9b/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000238112
1a
ENSE00001830696
chr2:
9563697-9563952
256
CPSF3_HUMAN
1-17
17
1
A:9-17
9
1.2
ENST00000238112
2
ENSE00001001227
chr2:
9568894-9568957
64
CPSF3_HUMAN
17-38
22
1
A:17-38
22
1.3
ENST00000238112
3
ENSE00001001223
chr2:
9570052-9570149
98
CPSF3_HUMAN
39-71
33
1
A:39-71
33
1.4
ENST00000238112
4
ENSE00001001219
chr2:
9570881-9571009
129
CPSF3_HUMAN
71-114
44
1
A:71-112
42
1.5
ENST00000238112
5
ENSE00002175356
chr2:
9572640-9572817
178
CPSF3_HUMAN
114-173
60
1
A:122-173
52
1.6
ENST00000238112
6
ENSE00000804644
chr2:
9574000-9574089
90
CPSF3_HUMAN
174-203
30
1
A:174-203 (gaps)
30
1.7
ENST00000238112
7
ENSE00000804643
chr2:
9576340-9576490
151
CPSF3_HUMAN
204-254
51
1
A:204-254
51
1.8
ENST00000238112
8
ENSE00000804641
chr2:
9580620-9580795
176
CPSF3_HUMAN
254-312
59
1
A:254-312 (gaps)
59
1.9b
ENST00000238112
9b
ENSE00000804640
chr2:
9581947-9582105
159
CPSF3_HUMAN
313-365
53
1
A:313-365
53
1.10
ENST00000238112
10
ENSE00000804638
chr2:
9583644-9583790
147
CPSF3_HUMAN
366-414
49
1
A:366-414
49
1.11
ENST00000238112
11
ENSE00000804672
chr2:
9588327-9588479
153
CPSF3_HUMAN
415-465
51
1
A:415-459
45
1.12
ENST00000238112
12
ENSE00001001221
chr2:
9593042-9593150
109
CPSF3_HUMAN
466-502
37
0
-
-
1.13
ENST00000238112
13
ENSE00001001222
chr2:
9595788-9595886
99
CPSF3_HUMAN
502-535
34
0
-
-
1.14a
ENST00000238112
14a
ENSE00001001224
chr2:
9597062-9597156
95
CPSF3_HUMAN
535-566
32
0
-
-
1.15a
ENST00000238112
15a
ENSE00001001217
chr2:
9599660-9599747
88
CPSF3_HUMAN
567-596
30
0
-
-
1.18a
ENST00000238112
18a
ENSE00001001216
chr2:
9607836-9607905
70
CPSF3_HUMAN
596-619
24
0
-
-
1.19
ENST00000238112
19
ENSE00001001220
chr2:
9611472-9611568
97
CPSF3_HUMAN
619-651
33
0
-
-
1.20c
ENST00000238112
20c
ENSE00001853797
chr2:
9613045-9613230
186
CPSF3_HUMAN
652-684
33
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2i7ta1 (A:9-459)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-hydrolase/oxidoreductase
(184)
Superfamily
:
Metallo-hydrolase/oxidoreductase
(184)
Family
:
beta-CASP RNA-metabolising hydrolases
(13)
Protein domain
:
Cleavage and polyadenylation specificity factor subunit 3
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2i7ta1
A:9-459
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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