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2I7S
Biol. Unit 2
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Asym.Unit (153 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (77 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RE(PHEN)(CO)3 (THR124HIS)(HIS83GLN) AZURIN CU(II) FROM PSEUDOMONAS AERUGINOSA
Authors
:
C. Gradinaru, B. R. Crane
Date
:
31 Aug 06 (Deposition) - 05 Dec 06 (Release) - 08 Dec 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Azurin, Rhenium, Electron Transfer In Proteins, Electron Transport
(Keyword Search:
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Reference
:
A. M. Blanco-Rodriguez, M. Busby, K. Ronayne, M. Towrie, C. Gradinaru, J. Sudhamsu, J. Sykora, M. Hof, S. Zalis, A. J. Di Bilio, B. R. Crane, H. B. Gray, A. Vlcek
Relaxation Dynamics Of Pseudomonas Aeruginosa Re(I)(Co)3(Alpha-Diimine)(Hisx)+ (X = 83, 107, 109, 124, 126)Cu(Ii) Azurins.
J. Am. Chem. Soc. V. 131 11788 2009
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: COBALT TETRAAMMINE ION (CONa)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
3a: (1,10 PHENANTHROLINE)-(TRI-CARBON ... (REPa)
3b: (1,10 PHENANTHROLINE)-(TRI-CARBON ... (REPb)
3c: (1,10 PHENANTHROLINE)-(TRI-CARBON ... (REPc)
3d: (1,10 PHENANTHROLINE)-(TRI-CARBON ... (REPd)
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No.
Name
Count
Type
Full Name
1
CON
1
Ligand/Ion
COBALT TETRAAMMINE ION
2
CU
-1
Ligand/Ion
COPPER (II) ION
3
REP
2
Ligand/Ion
(1,10 PHENANTHROLINE)-(TRI-CARBON MONOXIDE) RHENIUM (I)
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Sites
(7, 7)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC7 (SOFTWARE)
6: AC8 (SOFTWARE)
7: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
GLY B:245 , HIS B:246 , CYS B:312 , HIS B:317 , MET B:321
BINDING SITE FOR RESIDUE CU B 902
2
AC4
SOFTWARE
GLY D:645 , HIS D:646 , CYS D:712 , HIS D:717 , MET D:721
BINDING SITE FOR RESIDUE CU D 904
3
AC5
SOFTWARE
MET A:109 , HIS A:124 , HOH A:1413 , GLN B:307 , REP B:802
BINDING SITE FOR RESIDUE REP A 801
4
AC6
SOFTWARE
GLN A:107 , HIS A:124 , REP A:801 , MET B:309 , HIS B:324 , HOH B:1164 , HOH B:1239 , HOH B:1378
BINDING SITE FOR RESIDUE REP B 802
5
AC7
SOFTWARE
MET C:509 , LYS C:522 , HIS C:524 , HOH C:1188 , HOH C:1223 , GLN D:707 , HIS D:724 , REP D:804
BINDING SITE FOR RESIDUE REP C 803
6
AC8
SOFTWARE
GLN C:507 , HIS C:524 , REP C:803 , MET D:709 , HIS D:724
BINDING SITE FOR RESIDUE REP D 804
7
AC9
SOFTWARE
ASP B:276 , ASP B:277 , VAL B:280 , ILE B:281 , HOH B:1301 , HOH B:1361
BINDING SITE FOR RESIDUE CON B 850
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: COPPER_BLUE (B:305-321,D:705-721)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_BLUE
PS00196
Type-1 copper (blue) proteins signature.
AZUR_PSEAE
125-141
2
-
B:305-321
-
D:705-721
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2i7sa_ (A:)
1b: SCOP_d2i7sb_ (B:)
1c: SCOP_d2i7sc_ (C:)
1d: SCOP_d2i7sd_ (D:)
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Protein Domains
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Organisms
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)
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Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Plastocyanin/azurin-like
(241)
Protein domain
:
Azurin
(95)
Pseudomonas aeruginosa [TaxId: 287]
(78)
1a
d2i7sa_
A:
1b
d2i7sb_
B:
1c
d2i7sc_
C:
1d
d2i7sd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2i7sA00 (A:1-128)
1b: CATH_2i7sB00 (B:201-328)
1c: CATH_2i7sC00 (C:401-528)
1d: CATH_2i7sD00 (D:601-728)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Pseudomonas aeruginosa. Organism_taxid: 287.
(36)
1a
2i7sA00
A:1-128
1b
2i7sB00
B:201-328
1c
2i7sC00
C:401-528
1d
2i7sD00
D:601-728
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Pfam Domains
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Asym.Unit (153 KB)
Header - Asym.Unit
Biol.Unit 1 (74 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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