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2I75
Asym. Unit
Info
Asym.Unit (50 KB)
Biol.Unit 1 (44 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PROTEIN TYROSINE PHOSPHATASE N4 (PTPN4)
Authors
:
E. Ugochukwu, A. Barr, P. Savitsky, N. Burgess, S. Das, A. Turnbull, F. V M. Sundstrom, A. Edwards, C. Arrowsmith, J. Weigelt, S. Knapp, Struct Genomics Consortium (Sgc)
Date
:
30 Aug 06 (Deposition) - 17 Oct 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ptpn4, Ptp, Tyrosine Phosphatase, Meg-1, Structural Genomics, Structural Genomics Consortium, Sgc, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Barr, E. Ugochukwu, W. H. Lee, O. N. King, P. Filippakopoulos, I. Alfano, P. Savitsky, N. A. Burgess-Brown, S. Muller, S. Knapp
Large-Scale Structural Analysis Of The Classical Human Protein Tyrosine Phosphatome.
Cell(Cambridge, Mass. ) V. 136 352 2009
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:853
BINDING SITE FOR RESIDUE SO4 A 1
2
AC2
SOFTWARE
ARG A:664 , LYS A:665
BINDING SITE FOR RESIDUE SO4 A 2
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TYR_PHOSPHATASE_PTP (A:655-911)
2: TYR_PHOSPHATASE_2 (A:828-902)
3: TYR_PHOSPHATASE_1 (A:850-860)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYR_PHOSPHATASE_PTP
PS50055
PTP type protein phosphatase family profile.
PTN4_HUMAN
655-911
1
A:655-911
2
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
PTN4_HUMAN
828-902
1
A:828-902
3
TYR_PHOSPHATASE_1
PS00383
Tyrosine specific protein phosphatases active site.
PTN4_HUMAN
850-860
1
A:850-860
[
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]
Exons
(8, 8)
Info
All Exons
Exon 1.23 (A:638-660)
Exon 1.24 (A:661-691)
Exon 1.25 (A:691-711 (gaps))
Exon 1.26b (A:712-760 (gaps))
Exon 1.27 (A:761-803)
Exon 1.28 (A:804-853)
Exon 1.29b (A:853-898)
Exon 1.30c (A:899-913)
View:
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All Exon Boundaries
1: Boundary 1.22/1.23
2: Boundary 1.23/1.24
3: Boundary 1.24/1.25
4: Boundary 1.25/1.26b
5: Boundary 1.26b/1.27
6: Boundary 1.27/1.28
7: Boundary 1.28/1.29b
8: Boundary 1.29b/1.30c
9: Boundary 1.30c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000263708
1a
ENSE00001202414
chr2:
120517207-120517960
754
PTN4_HUMAN
-
0
0
-
-
1.4b
ENST00000263708
4b
ENSE00002161456
chr2:
120567413-120567567
155
PTN4_HUMAN
1-46
46
0
-
-
1.5b
ENST00000263708
5b
ENSE00001071386
chr2:
120620112-120620219
108
PTN4_HUMAN
47-82
36
0
-
-
1.6
ENST00000263708
6
ENSE00001071393
chr2:
120634899-120634941
43
PTN4_HUMAN
83-97
15
0
-
-
1.7b
ENST00000263708
7b
ENSE00001071383
chr2:
120635040-120635118
79
PTN4_HUMAN
97-123
27
0
-
-
1.9b
ENST00000263708
9b
ENSE00001071380
chr2:
120639362-120639406
45
PTN4_HUMAN
123-138
16
0
-
-
1.10a
ENST00000263708
10a
ENSE00001071395
chr2:
120639673-120639725
53
PTN4_HUMAN
138-156
19
0
-
-
1.11b
ENST00000263708
11b
ENSE00001071376
chr2:
120640079-120640199
121
PTN4_HUMAN
156-196
41
0
-
-
1.12
ENST00000263708
12
ENSE00001071384
chr2:
120643371-120643458
88
PTN4_HUMAN
196-225
30
0
-
-
1.13
ENST00000263708
13
ENSE00001730738
chr2:
120658294-120658382
89
PTN4_HUMAN
226-255
30
0
-
-
1.14a
ENST00000263708
14a
ENSE00001694309
chr2:
120672755-120672818
64
PTN4_HUMAN
255-276
22
0
-
-
1.15
ENST00000263708
15
ENSE00001803769
chr2:
120677645-120677817
173
PTN4_HUMAN
277-334
58
0
-
-
1.16
ENST00000263708
16
ENSE00001640493
chr2:
120684174-120684242
69
PTN4_HUMAN
334-357
24
0
-
-
1.17b
ENST00000263708
17b
ENSE00001645678
chr2:
120690000-120690125
126
PTN4_HUMAN
357-399
43
0
-
-
1.18a
ENST00000263708
18a
ENSE00001696851
chr2:
120692376-120692534
159
PTN4_HUMAN
399-452
54
0
-
-
1.19
ENST00000263708
19
ENSE00001749019
chr2:
120702657-120702816
160
PTN4_HUMAN
452-505
54
0
-
-
1.20
ENST00000263708
20
ENSE00001771605
chr2:
120703917-120704000
84
PTN4_HUMAN
506-533
28
0
-
-
1.21a
ENST00000263708
21a
ENSE00001594878
chr2:
120704094-120704150
57
PTN4_HUMAN
534-552
19
0
-
-
1.22
ENST00000263708
22
ENSE00001621051
chr2:
120709549-120709705
157
PTN4_HUMAN
553-605
53
0
-
-
1.23
ENST00000263708
23
ENSE00001731922
chr2:
120712733-120712899
167
PTN4_HUMAN
605-660
56
1
A:638-660
23
1.24
ENST00000263708
24
ENSE00001660931
chr2:
120714420-120714510
91
PTN4_HUMAN
661-691
31
1
A:661-691
31
1.25
ENST00000263708
25
ENSE00001797325
chr2:
120714592-120714653
62
PTN4_HUMAN
691-711
21
1
A:691-711 (gaps)
21
1.26b
ENST00000263708
26b
ENSE00001751186
chr2:
120718383-120718529
147
PTN4_HUMAN
712-760
49
1
A:712-760 (gaps)
49
1.27
ENST00000263708
27
ENSE00001765275
chr2:
120720192-120720320
129
PTN4_HUMAN
761-803
43
1
A:761-803
43
1.28
ENST00000263708
28
ENSE00001760145
chr2:
120723073-120723221
149
PTN4_HUMAN
804-853
50
1
A:804-853
50
1.29b
ENST00000263708
29b
ENSE00001771727
chr2:
120725413-120725548
136
PTN4_HUMAN
853-898
46
1
A:853-898
46
1.30c
ENST00000263708
30c
ENSE00001703057
chr2:
120734560-120741394
6835
PTN4_HUMAN
899-926
28
1
A:899-913
15
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2i75a_ (A:)
View:
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
automated matches
(83)
Protein domain
:
automated matches
(83)
Human (Homo sapiens) [TaxId: 9606]
(76)
1a
d2i75a_
A:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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