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2I6U
Asym. Unit
Info
Asym.Unit (158 KB)
Biol.Unit 1 (153 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ORNITHINE CARBAMOYLTRANSFERASE COMPLEXED WITH CARBAMOYL PHOSPHATE AND L-NORVALINE FROM MYCOBACTERIUM TUBERCULOSIS (RV1656) AT 2.2 A
Authors
:
R. Sankaranarayanan, F. Moradian, L. T. Cherney, C. Garen, M. M. Cherney, M. N. G. James, Tb Structural Genomics Consortium (Tbsgc)
Date
:
29 Aug 06 (Deposition) - 26 Jun 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
X-Ray Crystallography, Mycobacterium Tuberculosis, Ornithine Carbamyoltransferase, Carbamoyl Phosphate, L- Norvaline, Structural Genomics, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Sankaranarayanan, M. M. Cherney, L. T. Cherney, C. R. Garen, F. Moradian, M. N. James
The Crystal Structures Of Ornithine Carbamoyltransferase From Mycobacterium Tuberculosis And Its Ternary Complex With Carbamoyl Phosphate And L-Norvaline Reveal The Enzyme'S Catalytic Mechanism
J. Mol. Biol. V. 375 1052 2008
(for further references see the
PDB file header
)
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: PHOSPHORIC ACID MONO(FORMAMIDE)EST... (CPa)
1b: PHOSPHORIC ACID MONO(FORMAMIDE)EST... (CPb)
1c: PHOSPHORIC ACID MONO(FORMAMIDE)EST... (CPc)
2a: NORVALINE (NVAa)
2b: NORVALINE (NVAb)
2c: NORVALINE (NVAc)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CP
3
Ligand/Ion
PHOSPHORIC ACID MONO(FORMAMIDE)ESTER
2
NVA
3
Ligand/Ion
NORVALINE
3
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:34 , GLN A:37 , HOH A:805 , ARG B:34
BINDING SITE FOR RESIDUE SO4 A 800
02
AC2
SOFTWARE
ASN A:248 , SER A:249 , THR A:274 , HOH A:812 , HOH A:862 , HOH A:922
BINDING SITE FOR RESIDUE SO4 A 801
03
AC3
SOFTWARE
ASN B:248 , SER B:249 , THR B:274 , HOH B:881
BINDING SITE FOR RESIDUE SO4 B 801
04
AC4
SOFTWARE
ASN C:248 , SER C:249 , THR C:274 , ALA C:276 , HOH C:867
BINDING SITE FOR RESIDUE SO4 C 801
05
AC5
SOFTWARE
ARG C:243 , ASN C:248 , HOH C:845 , HOH C:974
BINDING SITE FOR RESIDUE SO4 C 802
06
AC6
SOFTWARE
SER A:50 , THR A:51 , ARG A:52 , THR A:53 , ARG A:101 , HIS A:128 , GLN A:131 , CYS A:264 , LEU A:265 , ARG A:292 , NVA A:600 , GLN C:77
BINDING SITE FOR RESIDUE CP A 500
07
AC7
SOFTWARE
ASN A:159 , ASN A:160 , ASP A:224 , SER A:228 , MET A:229 , LEU A:265 , CP A:500 , HOH A:830 , HOH A:858
BINDING SITE FOR RESIDUE NVA A 600
08
AC8
SOFTWARE
GLN A:77 , SER B:50 , THR B:51 , ARG B:52 , THR B:53 , ARG B:101 , HIS B:128 , GLN B:131 , CYS B:264 , LEU B:265 , ARG B:292 , NVA B:601
BINDING SITE FOR RESIDUE CP B 501
09
AC9
SOFTWARE
HOH A:853 , LEU B:123 , ASN B:160 , ASP B:224 , SER B:228 , MET B:229 , LEU B:265 , CP B:501 , HOH B:858
BINDING SITE FOR RESIDUE NVA B 601
10
BC1
SOFTWARE
GLN B:77 , SER C:50 , THR C:51 , ARG C:52 , THR C:53 , ARG C:101 , HIS C:128 , GLN C:131 , CYS C:264 , LEU C:265 , ARG C:292 , NVA C:602
BINDING SITE FOR RESIDUE CP C 502
11
BC2
SOFTWARE
HOH B:815 , LEU C:123 , HIS C:128 , ASN C:159 , ASN C:160 , ASP C:224 , SER C:228 , MET C:229 , LEU C:265 , CP C:502 , HOH C:808
BINDING SITE FOR RESIDUE NVA C 602
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: CARBAMOYLTRANSFERASE (A:46-53,B:46-53,C:46-53,A:46-53,B:...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBAMOYLTRANSFERASE
PS00097
Aspartate and ornithine carbamoyltransferases signature.
OTC_MYCTO
46-53
3
A:46-53
B:46-53
C:46-53
OTC_MYCTU
46-53
3
A:46-53
B:46-53
C:46-53
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2i6ua1 (A:1-143)
1b: SCOP_d2i6ua2 (A:144-307)
1c: SCOP_d2i6ub1 (B:1-143)
1d: SCOP_d2i6ub2 (B:144-307)
1e: SCOP_d2i6uc1 (C:1-143)
1f: SCOP_d2i6uc2 (C:144-307)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ATC-like
(129)
Superfamily
:
Aspartate/ornithine carbamoyltransferase
(122)
Family
:
automated matches
(35)
Protein domain
:
automated matches
(35)
Mycobacterium tuberculosis [TaxId: 1773]
(1)
1a
d2i6ua1
A:1-143
1b
d2i6ua2
A:144-307
1c
d2i6ub1
B:1-143
1d
d2i6ub2
B:144-307
1e
d2i6uc1
C:1-143
1f
d2i6uc2
C:144-307
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2i6uA01 (A:1-130,A:292-307)
1b: CATH_2i6uB01 (B:1-130,B:292-307)
1c: CATH_2i6uC01 (C:1-130,C:292-307)
1d: CATH_2i6uA02 (A:131-291)
1e: CATH_2i6uB02 (B:131-291)
1f: CATH_2i6uC02 (C:131-291)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1370, no name defined]
(91)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(1)
1a
2i6uA01
A:1-130,A:292-307
1b
2i6uB01
B:1-130,B:292-307
1c
2i6uC01
C:1-130,C:292-307
1d
2i6uA02
A:131-291
1e
2i6uB02
B:131-291
1f
2i6uC02
C:131-291
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (158 KB)
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