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2I5C
Asym. Unit
Info
Asym.Unit (118 KB)
Biol.Unit 1 (39 KB)
Biol.Unit 2 (39 KB)
Biol.Unit 3 (39 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C-TERMINAL PH DOMAIN OF PLECKSTRIN IN COMPLEX WITH D-MYO-INS(1,2,3,4,5)P5
Authors
:
S. G. Jackson, R. J. Haslam, M. S. Junop
Date
:
24 Aug 06 (Deposition) - 07 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Ph Domain, Protein-Inositol Phosphate Complex, Lipid Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. G. Jackson, Y. Zhang, R. J. Haslam, M. S. Junop
Structural Analysis Of The Carboxy Terminal Ph Domain Of Pleckstrin Bound To D-Myo-Inositol 1, 2, 3, 5, 6-Pentakisphosphate.
Bmc Struct. Biol. V. 7 80 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: (1R,2S,3R,4S,5S,6R)-6-HYDROXYCYCLO... (IP5a)
1b: (1R,2S,3R,4S,5S,6R)-6-HYDROXYCYCLO... (IP5b)
1c: (1R,2S,3R,4S,5S,6R)-6-HYDROXYCYCLO... (IP5c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
IP5
3
Ligand/Ion
(1R,2S,3R,4S,5S,6R)-6-HYDROXYCYCLOHEXANE-1,2,3,4,5-PENTAYL PENTAKIS[DIHYDROGEN (PHOSPHATE)]
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:253 , GLY A:255 , HIS A:256 , ARG A:257 , ARG A:258 , ARG A:264 , TYR A:277 , HOH A:579 , HOH A:582 , HOH A:583 , HOH A:589 , HOH A:592 , HOH A:607 , HOH A:625 , HOH A:628 , HOH A:631 , ARG C:257
BINDING SITE FOR RESIDUE IP5 A 550
2
AC2
SOFTWARE
LYS A:333 , LYS B:253 , GLY B:255 , HIS B:256 , ARG B:257 , ARG B:258 , ARG B:264 , TYR B:277 , HOH B:569 , HOH B:571 , HOH B:587 , HOH B:602 , HOH B:603 , HOH B:605 , HOH B:630 , HOH B:645
BINDING SITE FOR RESIDUE IP5 B 551
3
AC3
SOFTWARE
ARG A:257 , LYS C:253 , GLY C:255 , HIS C:256 , ARG C:257 , ARG C:258 , ARG C:264 , TYR C:277 , LYS C:333 , HOH C:564 , HOH C:578 , HOH C:593 , HOH C:594 , HOH C:595 , HOH C:608 , HOH C:619 , HOH C:623 , HOH C:627 , HOH C:632 , HOH C:642
BINDING SITE FOR RESIDUE IP5 C 552
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SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_027799 (K340K, chain A/B/C, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_027799
R
340
K
PLEK_HUMAN
Polymorphism
1063479
A/B/C
K
340
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: PH_DOMAIN (-|A:244-347,B:244-347,C:244-347)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PH_DOMAIN
PS50003
PH domain profile.
PLEK_HUMAN
4-101
244-347
3
-
A:244-347
B:244-347
C:244-347
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Exons
(4, 12)
Info
All Exons
Exon 1.6b (A:244-254 | B:244-254 | C:244-254)
Exon 1.7 (A:255-282 | B:255-282 | C:255-282)
Exon 1.8a (A:283-300 | B:283-300 | C:283-300)
Exon 1.9b (A:311-347 | B:311-347 | C:311-347)
View:
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All Exon Boundaries
1: Boundary 1.5/1.6b
2: Boundary 1.6b/1.7
3: Boundary 1.7/1.8a
4: Boundary 1.8a/1.9b
5: Boundary 1.9b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000234313
1a
ENSE00001911788
chr2:
68592305-68592525
221
PLEK_HUMAN
1-14
14
0
-
-
1.2
ENST00000234313
2
ENSE00000963053
chr2:
68607460-68607615
156
PLEK_HUMAN
15-66
52
0
-
-
1.3
ENST00000234313
3
ENSE00000758794
chr2:
68607855-68608036
182
PLEK_HUMAN
67-127
61
0
-
-
1.4
ENST00000234313
4
ENSE00000758796
chr2:
68609674-68609765
92
PLEK_HUMAN
127-158
32
0
-
-
1.5
ENST00000234313
5
ENSE00000758798
chr2:
68613634-68613818
185
PLEK_HUMAN
158-219
62
0
-
-
1.6b
ENST00000234313
6b
ENSE00000758800
chr2:
68615519-68615623
105
PLEK_HUMAN
220-254
35
3
A:244-254
B:244-254
C:244-254
11
11
11
1.7
ENST00000234313
7
ENSE00000758802
chr2:
68620294-68620377
84
PLEK_HUMAN
255-282
28
3
A:255-282
B:255-282
C:255-282
28
28
28
1.8a
ENST00000234313
8a
ENSE00000758804
chr2:
68621239-68621308
70
PLEK_HUMAN
283-306
24
3
A:283-300
B:283-300
C:283-300
18
18
18
1.9b
ENST00000234313
9b
ENSE00001163794
chr2:
68622812-68624585
1774
PLEK_HUMAN
306-350
45
3
A:311-347
B:311-347
C:311-347
37
37
37
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2i5ca_ (A:)
1b: SCOP_d2i5cb_ (B:)
1c: SCOP_d2i5cc_ (C:)
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Protein Domains
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(
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
Pleckstrin
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d2i5ca_
A:
1b
d2i5cb_
B:
1c
d2i5cc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2i5cA00 (A:244-347)
1b: CATH_2i5cB00 (B:244-347)
1c: CATH_2i5cC00 (C:244-347)
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Organisms
(
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(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
Human (Homo sapiens)
(85)
1a
2i5cA00
A:244-347
1b
2i5cB00
B:244-347
1c
2i5cC00
C:244-347
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (118 KB)
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Header - Biol.Unit 1
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