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2I2R
Asym. Unit
Info
Asym.Unit (393 KB)
Biol.Unit 1 (191 KB)
Biol.Unit 2 (191 KB)
Biol.Unit 3 (375 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE KCHIP1/KV4.3 T1 COMPLEX
Authors
:
F. Findeisen, M. Pioletti, D. L. Minor Jr.
Date
:
16 Aug 06 (Deposition) - 24 Oct 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.35
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Biol. Unit 2: I,J,K,L,M,N,O,P (1x)
Biol. Unit 3: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P (1x)
Keywords
:
Ef-Hand Protein, Complex, Potassium Channel, Ncs Protein, Calcium Binding Protein, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Pioletti, F. Findeisen, G. L. Hura, D. L. Minor Jr.
Three-Dimensional Structure Of The Kchip1-Kv4. 3 T1 Complex Reveals A Cross-Shaped Octamer
Nat. Struct. Mol. Biol. V. 13 987 2006
[
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Hetero Components
(3, 28)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
16
Ligand/Ion
CALCIUM ION
2
NA
4
Ligand/Ion
SODIUM ION
3
ZN
8
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP F:135 , ASN F:137 , ASP F:139 , TYR F:141 , GLU F:146
BINDING SITE FOR RESIDUE CA F 501
02
AC2
SOFTWARE
ASP H:135 , ASN H:137 , ASP H:139 , TYR H:141 , GLU H:146
BINDING SITE FOR RESIDUE CA H 502
03
AC3
SOFTWARE
ASP E:135 , ASN E:137 , ASP E:139 , TYR E:141 , GLU E:146
BINDING SITE FOR RESIDUE CA E 503
04
AC4
SOFTWARE
ASP G:135 , ASN G:137 , ASP G:139 , TYR G:141 , GLU G:146
BINDING SITE FOR RESIDUE CA G 504
05
AC5
SOFTWARE
ASP P:135 , ASN P:137 , ASP P:139 , TYR P:141 , GLU P:146
BINDING SITE FOR RESIDUE CA P 505
06
AC6
SOFTWARE
ASP M:135 , ASN M:137 , ASP M:139 , TYR M:141 , GLU M:146
BINDING SITE FOR RESIDUE CA M 506
07
AC7
SOFTWARE
ASP N:135 , ASN N:137 , ASP N:139 , TYR N:141 , GLU N:146
BINDING SITE FOR RESIDUE CA N 507
08
AC8
SOFTWARE
ASP O:135 , ASN O:137 , ASP O:139 , TYR O:141 , GLU O:146
BINDING SITE FOR RESIDUE CA O 508
09
AC9
SOFTWARE
ASP F:183 , ASN F:185 , ASP F:187 , ILE F:189 , GLU F:194
BINDING SITE FOR RESIDUE CA F 509
10
BC1
SOFTWARE
ASP H:183 , ASN H:185 , ASP H:187 , ILE H:189 , GLU H:194
BINDING SITE FOR RESIDUE CA H 510
11
BC2
SOFTWARE
ASP E:183 , ASN E:185 , ASP E:187 , ILE E:189 , GLU E:194
BINDING SITE FOR RESIDUE CA E 511
12
BC3
SOFTWARE
ASP G:183 , ASN G:185 , ASP G:187 , ILE G:189 , GLU G:194
BINDING SITE FOR RESIDUE CA G 512
13
BC4
SOFTWARE
ASP P:183 , ASN P:185 , ASP P:187 , ILE P:189 , GLU P:194
BINDING SITE FOR RESIDUE CA P 513
14
BC5
SOFTWARE
ASP M:183 , ASN M:185 , ASP M:187 , ILE M:189 , GLU M:194
BINDING SITE FOR RESIDUE CA M 514
15
BC6
SOFTWARE
ASP N:183 , ASN N:185 , ASP N:187 , ILE N:189 , GLU N:194
BINDING SITE FOR RESIDUE CA N 515
16
BC7
SOFTWARE
ASP O:183 , ASN O:185 , ASP O:187 , ILE O:189 , GLU O:194
BINDING SITE FOR RESIDUE CA O 516
17
BC8
SOFTWARE
HIS A:104 , CYS A:131 , CYS A:132 , CYS B:110
BINDING SITE FOR RESIDUE ZN A 601
18
BC9
SOFTWARE
HIS B:104 , CYS B:131 , CYS B:132 , CYS C:110
BINDING SITE FOR RESIDUE ZN B 602
19
CC1
SOFTWARE
HIS C:104 , CYS C:131 , CYS C:132 , CYS D:110
BINDING SITE FOR RESIDUE ZN C 603
20
CC2
SOFTWARE
CYS A:110 , HIS D:104 , CYS D:131 , CYS D:132
BINDING SITE FOR RESIDUE ZN D 604
21
CC3
SOFTWARE
HIS I:104 , CYS I:131 , CYS I:132 , CYS J:110
BINDING SITE FOR RESIDUE ZN I 605
22
CC4
SOFTWARE
HIS J:104 , CYS J:131 , CYS J:132 , CYS K:110
BINDING SITE FOR RESIDUE ZN J 606
23
CC5
SOFTWARE
HIS K:104 , CYS K:131 , CYS K:132 , CYS L:110
BINDING SITE FOR RESIDUE ZN K 607
24
CC6
SOFTWARE
CYS I:110 , HIS L:104 , CYS L:131 , CYS L:132
BINDING SITE FOR RESIDUE ZN L 608
25
CC7
SOFTWARE
GLU H:43 , THR H:46 , PHE H:48
BINDING SITE FOR RESIDUE NA H 701
26
CC8
SOFTWARE
GLU F:43 , THR F:46 , PHE F:48
BINDING SITE FOR RESIDUE NA F 702
27
CC9
SOFTWARE
GLU E:43 , THR E:46 , PHE E:48
BINDING SITE FOR RESIDUE NA E 703
28
DC1
SOFTWARE
GLU G:43 , THR G:46 , PHE G:48
BINDING SITE FOR RESIDUE NA G 704
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 40)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (E:86-121,F:86-121,G:86-121,H:86-12...)
2: EF_HAND_1 (E:135-147,F:135-147,G:135-147,H:13...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
KCIP1_HUMAN
97-132
133-168
181-216
24
E:86-121
F:86-121
G:86-121
H:86-121
M:86-121
N:86-121
O:86-121
P:86-121
E:122-157
F:122-157
G:122-157
H:122-157
M:122-157
N:122-157
O:122-157
P:122-157
E:170-205
F:170-205
G:170-205
H:170-205
M:170-205
N:170-205
O:170-205
P:170-205
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
KCIP1_HUMAN
146-158
194-206
16
E:135-147
F:135-147
G:135-147
H:135-147
M:135-147
N:135-147
O:135-147
P:135-147
E:183-195
F:183-195
G:183-195
H:183-195
M:183-195
N:183-195
O:183-195
P:183-195
[
close PROSITE info
]
Exons
(1, 8)
Info
All Exons
Exon 1.2a (A:3-140 (gaps) | B:3-140 (gaps) | ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.2a
2: Boundary 1.2a/1.3
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSRNOT00000019997
1a
ENSRNOE00000298461
chr2:
200709772-200709795
24
KCND3_RAT
-
0
0
-
-
1.2a
ENSRNOT00000019997
2a
ENSRNOE00000354841
chr2:
200716520-200717699
1180
KCND3_RAT
1-369
369
8
A:3-140 (gaps)
B:3-140 (gaps)
C:3-140 (gaps)
D:3-140 (gaps)
I:3-140 (gaps)
J:3-140 (gaps)
K:3-140 (gaps)
L:3-140
138
138
138
138
138
138
138
138
1.3
ENSRNOT00000019997
3
ENSRNOE00000143597
chr2:
200911194-200911356
163
KCND3_RAT
369-423
55
0
-
-
1.4
ENSRNOT00000019997
4
ENSRNOE00000144008
chr2:
200917633-200917734
102
KCND3_RAT
424-457
34
0
-
-
1.5
ENSRNOT00000019997
5
ENSRNOE00000320454
chr2:
200918068-200918157
90
KCND3_RAT
458-487
30
0
-
-
1.6
ENSRNOT00000019997
6
ENSRNOE00000144712
chr2:
200919583-200919639
57
KCND3_RAT
488-506
19
0
-
-
1.7
ENSRNOT00000019997
7
ENSRNOE00000144844
chr2:
200920698-200920945
248
KCND3_RAT
507-589
83
0
-
-
1.8b
ENSRNOT00000019997
8b
ENSRNOE00000142847
chr2:
200921611-200921812
202
KCND3_RAT
589-655
67
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2i2rN00 (N:38-216)
1b: CATH_2i2rO00 (O:38-214)
1c: CATH_2i2rM00 (M:37-216)
1d: CATH_2i2rP00 (P:38-216)
1e: CATH_2i2rG00 (G:37-215)
1f: CATH_2i2rH00 (H:38-211)
1g: CATH_2i2rE00 (E:38-216)
1h: CATH_2i2rF00 (F:37-216)
View:
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Classes
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)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Norway rat (Rattus norvegicus)
(37)
1a
2i2rN00
N:38-216
1b
2i2rO00
O:38-214
1c
2i2rM00
M:37-216
1d
2i2rP00
P:38-216
1e
2i2rG00
G:37-215
1f
2i2rH00
H:38-211
1g
2i2rE00
E:38-216
1h
2i2rF00
F:37-216
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Chain B
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Asym.Unit (393 KB)
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