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2I1P
Asym. Unit
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Asym.Unit (224 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE TWELFTH CYSTEINE-RICH LIGAND-BINDING REPEAT IN RAT MEGALIN
Authors
:
C. A. Wolf, F. Dancea, M. Shi, V. Bade-Noskova, H. Rueterjans, D. Kerjaschki, C. Luecke
Date
:
14 Aug 06 (Deposition) - 13 Feb 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Low Density Lipoprotein Receptor, Cysteine-Rich Repeat, Ligand Binding Domain, Calcium Cage, Ligand Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. A. Wolf, F. Dancea, M. Shi, V. Bade-Noskova, H. Rueterjans, D. Kerjaschki, C. Luecke
Solution Structure Of The Twelfth Cysteine-Rich Ligand-Binding Repeat In Rat Megalin.
J. Biomol. Nmr V. 37 321 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:1206 , ASP A:1209 , VAL A:1211 , ASP A:1213 , ASP A:1219 , GLU A:1220
BINDING SITE FOR RESIDUE CA A 1230
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available in "Model" view)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LDLRA_2 (-|-|-|-|-|-|-|-|-|-|-|A:1187-1224|...)
2: LDLRA_1 (-|-|-|-|-|-|-|-|-|A:1201-1223|-|-|...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LDLRA_2
PS50068
LDL-receptor class A (LDLRA) domain profile.
LRP2_RAT
27-63
66-104
107-143
141-180
182-218
221-257
264-307
1024-1060
1065-1102
1109-1145
1149-1185
1187-1224
1230-1268
1271-1307
1312-1350
2700-2738
2741-2777
2780-2819
2864-2902
2822-2861
2907-2946
2949-2991
2994-3030
3033-3071
3076-3112
3513-3551
3554-3592
3595-3633
3636-3674
3679-3717
3720-3757
3760-3796
3799-3835
3843-3881
3884-3923
3929-3965
1
-
-
-
-
-
-
-
-
-
-
-
A:1187-1224
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2
LDLRA_1
PS01209
LDL-receptor class A (LDLRA) domain signature.
LRP2_RAT
40-62
80-103
120-142
195-217
234-256
1037-1059
1079-1101
1122-1144
1162-1184
1201-1223
1244-1267
1284-1306
1326-1349
2713-2737
2754-2776
2836-2860
2878-2901
2920-2945
3007-3029
3046-3070
3089-3111
3527-3550
3608-3632
3649-3673
3694-3716
3734-3756
3773-3795
3812-3834
3856-3880
3898-3922
3942-3964
1
-
-
-
-
-
-
-
-
-
A:1201-1223
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2i1pA00 (A:1182-1229)
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)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Low-density Lipoprotein Receptor
(15)
Homologous Superfamily
:
Low-density Lipoprotein Receptor
(15)
Norway rat (Rattus norvegicus)
(1)
1a
2i1pA00
A:1182-1229
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Pfam Domains
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Chain A
Asymmetric Unit 1
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