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Getting 'Exon' information from database.
2I1N
Asym. Unit
Info
Asym.Unit (41 KB)
Biol.Unit 1 (18 KB)
Biol.Unit 2 (19 KB)
Biol.Unit 3 (69 KB)
Biol.Unit 4 (69 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE 1ST PDZ DOMAIN OF HUMAN DLG3
Authors
:
A. P. Turnbull, C. Phillips, G. Bunkoczi, J. Debreczeni, E. Ugochukwu, A. C. W. Pike, F. Gorrec, C. Umeano, J. Elkins, G. Berridge, P. Savitsky O. Gileadi, F. Von Delft, J. Weigelt, A. Edwards, C. Arrowsmith, M. Su D. Doyle, Structural Genomics Consortium (Sgc)
Date
:
14 Aug 06 (Deposition) - 05 Sep 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (2x)
Biol. Unit 4: A,B (2x)
Keywords
:
Dlg3, Pdz, Pdz Domain, Signal Transduction, Structural Genomics, Structural Genomics Consortium, Sgc, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Elkins, E. Papagrigoriou, G. Berridge, X. Yang, C. Phillips, C. Gileadi, P. Savitsky, D. A. Doyle
Structure Of Pick1 And Other Pdz Domains Obtained With The Help Of Self-Binding C-Terminal Extensions.
Protein Sci. V. 16 683 2007
[
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
1c: SODIUM ION (NAc)
1d: SODIUM ION (NAd)
1e: SODIUM ION (NAe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NA
5
Ligand/Ion
SODIUM ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:194 , VAL A:195 , HOH B:387
BINDING SITE FOR RESIDUE NA A 305
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:131-218,B:131-218|A:225-225,B:22...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
DLG3_HUMAN
131-218
226-313
386-467
4
A:131-218
B:131-218
A:225-225
B:225-225
-
[
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Exons
(4, 8)
Info
All Exons
Exon 1.3 (A:126-136 | B:0-136)
Exon 1.4 (A:137-178 | B:137-178)
Exon 1.5 (A:178-222 | B:178-222)
Exon 1.6a (A:223-226 | B:223-226)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1b/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6a
5: Boundary 1.6a/1.6c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000374360
1b
ENSE00001958108
X:69664819-69665408
590
DLG3_HUMAN
1-119
119
0
-
-
1.3
ENST00000374360
3
ENSE00000672255
X:69668763-69668813
51
DLG3_HUMAN
120-136
17
2
A:126-136
B:0-136
11
12
1.4
ENST00000374360
4
ENSE00000672253
X:69669209-69669333
125
DLG3_HUMAN
137-178
42
2
A:137-178
B:137-178
42
42
1.5
ENST00000374360
5
ENSE00000672252
X:69669540-69669709
170
DLG3_HUMAN
178-235
58
2
A:178-222
B:178-222
45
45
1.6a
ENST00000374360
6a
ENSE00000436378
X:69670019-69670155
137
DLG3_HUMAN
235-280
46
2
A:223-226
B:223-226
4
4
1.6c
ENST00000374360
6c
ENSE00000672250
X:69670489-69670633
145
DLG3_HUMAN
281-329
49
0
-
-
1.7
ENST00000374360
7
ENSE00000672249
X:69671717-69671876
160
DLG3_HUMAN
329-382
54
0
-
-
1.9
ENST00000374360
9
ENSE00001599030
X:69673487-69673643
157
DLG3_HUMAN
382-434
53
0
-
-
1.10
ENST00000374360
10
ENSE00000672247
X:69674064-69674166
103
DLG3_HUMAN
435-469
35
0
-
-
1.13b
ENST00000374360
13b
ENSE00001675478
X:69699000-69699114
115
DLG3_HUMAN
469-507
39
0
-
-
1.14b
ENST00000374360
14b
ENSE00000672235
X:69711957-69712133
177
DLG3_HUMAN
507-566
60
0
-
-
1.15
ENST00000374360
15
ENSE00000436409
X:69712371-69712446
76
DLG3_HUMAN
566-591
26
0
-
-
1.17
ENST00000374360
17
ENSE00000815626
X:69715258-69715303
46
DLG3_HUMAN
592-607
16
0
-
-
1.19b
ENST00000374360
19b
ENSE00000672149
X:69718370-69718420
51
DLG3_HUMAN
607-624
18
0
-
-
1.20
ENST00000374360
20
ENSE00001705646
X:69719026-69719127
102
DLG3_HUMAN
624-658
35
0
-
-
1.21b
ENST00000374360
21b
ENSE00000672147
X:69719727-69719899
173
DLG3_HUMAN
658-715
58
0
-
-
1.22a
ENST00000374360
22a
ENSE00000672146
X:69720321-69720430
110
DLG3_HUMAN
716-752
37
0
-
-
1.22c
ENST00000374360
22c
ENSE00000436391
X:69720748-69720839
92
DLG3_HUMAN
752-783
32
0
-
-
1.23c
ENST00000374360
23c
ENSE00001154826
X:69722013-69725337
3325
DLG3_HUMAN
783-817
35
0
-
-
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2i1na_ (A:)
1b: SCOP_d2i1nb_ (B:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Human (Homo sapiens) [TaxId: 9606]
(71)
1a
d2i1na_
A:
1b
d2i1nb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2i1nA00 (A:126-226)
1b: CATH_2i1nB00 (B:0-226)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Pdz3 Domain
(191)
Homologous Superfamily
:
[code=2.30.42.10, no name defined]
(191)
Human (Homo sapiens)
(120)
1a
2i1nA00
A:126-226
1b
2i1nB00
B:0-226
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (41 KB)
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Biol.Unit 3 (69 KB)
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