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2I0E
Biol. Unit 2
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Asym.Unit (114 KB)
Biol.Unit 1 (57 KB)
Biol.Unit 2 (53 KB)
Biol.Unit 3 (112 KB)
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(1)
Title
:
STRUCTURE OF CATALYTIC DOMAIN OF HUMAN PROTEIN KINASE C BETA II COMPLEXED WITH A BISINDOLYLMALEIMIDE INHIBITOR
Authors
:
N. B. Grodsky, R. L. Love
Date
:
10 Aug 06 (Deposition) - 14 Nov 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A (2x)
Keywords
:
Protein Kinase C Beta Ii, Protein Kinase C, Serine/Threonine Protein Kinase, Transferase
(Keyword Search:
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)
Reference
:
N. Grodsky, Y. Li, D. Bouzida, R. Love, J. Jensen, B. Nodes, J. Nonomiya, S. Grant
Structure Of The Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
Biochemistry V. 45 13970 2006
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: 3-{1-[3-(DIMETHYLAMINO)PROPYL]-2-M... (PDSa)
1b: 3-{1-[3-(DIMETHYLAMINO)PROPYL]-2-M... (PDSb)
2a: PHOSPHOSERINE (SEPa)
2b: PHOSPHOSERINE (SEPb)
3a: PHOSPHOTHREONINE (TPOa)
3b: PHOSPHOTHREONINE (TPOb)
3c: PHOSPHOTHREONINE (TPOc)
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No.
Name
Count
Type
Full Name
1
PDS
1
Ligand/Ion
3-{1-[3-(DIMETHYLAMINO)PROPYL]-2-METHYL-1H-INDOL-3-YL}-4-(2-METHYL-1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE
2
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
3
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
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Sites
(1, 1)
Info
All Sites
1: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
HOH B:59 , LEU B:348 , VAL B:356 , ALA B:369 , THR B:404 , MET B:420 , GLU B:421 , TYR B:422 , VAL B:423 , ASP B:470 , ASN B:471 , ALA B:483 , ASP B:484
BINDING SITE FOR RESIDUE PDS B 902
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_042305 (V496M, chain B, )
2: VAR_042306 (P588H, chain B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042305
V
496
M
KPCB_HUMAN
Unclassified
---
B
V
496
M
2
UniProt
VAR_042306
P
588
H
KPCB_HUMAN
Polymorphism
35631544
B
P
588
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (B:348-371)
2: PROTEIN_KINASE_ST (B:462-474)
3: AGC_KINASE_CTER (B:601-666)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
KPCB_HUMAN
348-371
1
-
B:348-371
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
KPCB_HUMAN
462-474
1
-
B:462-474
3
AGC_KINASE_CTER
PS51285
AGC-kinase C-terminal domain profile.
KPCB_HUMAN
601-671
1
-
B:601-666
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2i0ea_ (A:)
1b: SCOP_d2i0eb_ (B:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d2i0ea_
A:
1b
d2i0eb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2i0eB01 (B:339-422,B:620-669)
1b: CATH_2i0eA01 (A:339-426,A:621-659)
2a: CATH_2i0eB02 (B:423-619)
2b: CATH_2i0eA02 (A:427-620)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2i0eB01
B:339-422,B:620-669
1b
2i0eA01
A:339-426,A:621-659
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
2i0eB02
B:423-619
2b
2i0eA02
A:427-620
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Pfam Domains
(0, 0)
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Chain B
Asymmetric Unit 1
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Asym.Unit (114 KB)
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