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2I0E
Asym. Unit
Info
Asym.Unit (114 KB)
Biol.Unit 1 (57 KB)
Biol.Unit 2 (53 KB)
Biol.Unit 3 (112 KB)
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(1)
Title
:
STRUCTURE OF CATALYTIC DOMAIN OF HUMAN PROTEIN KINASE C BETA II COMPLEXED WITH A BISINDOLYLMALEIMIDE INHIBITOR
Authors
:
N. B. Grodsky, R. L. Love
Date
:
10 Aug 06 (Deposition) - 14 Nov 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A (2x)
Keywords
:
Protein Kinase C Beta Ii, Protein Kinase C, Serine/Threonine Protein Kinase, Transferase
(Keyword Search:
[
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]
)
Reference
:
N. Grodsky, Y. Li, D. Bouzida, R. Love, J. Jensen, B. Nodes, J. Nonomiya, S. Grant
Structure Of The Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
Biochemistry V. 45 13970 2006
(for further references see the
PDB file header
)
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: 3-{1-[3-(DIMETHYLAMINO)PROPYL]-2-M... (PDSa)
1b: 3-{1-[3-(DIMETHYLAMINO)PROPYL]-2-M... (PDSb)
2a: PHOSPHOSERINE (SEPa)
2b: PHOSPHOSERINE (SEPb)
3a: PHOSPHOTHREONINE (TPOa)
3b: PHOSPHOTHREONINE (TPOb)
3c: PHOSPHOTHREONINE (TPOc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PDS
2
Ligand/Ion
3-{1-[3-(DIMETHYLAMINO)PROPYL]-2-METHYL-1H-INDOL-3-YL}-4-(2-METHYL-1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE
2
SEP
2
Mod. Amino Acid
PHOSPHOSERINE
3
TPO
3
Mod. Amino Acid
PHOSPHOTHREONINE
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:57 , LEU A:348 , PHE A:353 , VAL A:356 , ALA A:369 , THR A:404 , GLU A:421 , TYR A:422 , VAL A:423 , ASP A:470 , ASN A:471 , MET A:473 , ALA A:483 , ASP A:484
BINDING SITE FOR RESIDUE PDS A 901
2
AC2
SOFTWARE
HOH B:59 , LEU B:348 , VAL B:356 , ALA B:369 , THR B:404 , MET B:420 , GLU B:421 , TYR B:422 , VAL B:423 , ASP B:470 , ASN B:471 , ALA B:483 , ASP B:484
BINDING SITE FOR RESIDUE PDS B 902
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_042305 (V496M, chain A/B, )
2: VAR_042306 (P588H, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042305
V
496
M
KPCB_HUMAN
Unclassified
---
A/B
V
496
M
2
UniProt
VAR_042306
P
588
H
KPCB_HUMAN
Polymorphism
35631544
A/B
P
588
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:348-371,B:348-371)
2: PROTEIN_KINASE_ST (A:462-474,B:462-474)
3: AGC_KINASE_CTER (A:601-666,B:601-666)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
KPCB_HUMAN
348-371
2
A:348-371
B:348-371
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
KPCB_HUMAN
462-474
2
A:462-474
B:462-474
3
AGC_KINASE_CTER
PS51285
AGC-kinase C-terminal domain profile.
KPCB_HUMAN
601-671
2
A:601-666
B:601-666
[
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Exons
(9, 18)
Info
All Exons
Exon 1.11 (A:339-355 | B:339-355)
Exon 1.13 (A:356-413 | B:356-413)
Exon 1.14b (A:414-444 | B:414-444)
Exon 1.15b (A:444-465 | B:444-465)
Exon 1.16b (A:465-511 | B:465-511)
Exon 1.17 (A:512-538 | B:512-538)
Exon 1.18a (A:539-574 | B:539-574)
Exon 1.19a (A:575-621 | B:575-621)
Exon 1.20b (A:622-669 (gaps) | B:651-669)
View:
Select:
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All Exon Boundaries
01: Boundary 1.10b/1.11
02: Boundary 1.11/1.13
03: Boundary 1.13/1.14b
04: Boundary 1.14b/1.15b
05: Boundary 1.15b/1.16b
06: Boundary 1.16b/1.17
07: Boundary 1.17/1.18a
08: Boundary 1.18a/1.19a
09: Boundary 1.19a/1.20b
10: Boundary 1.20b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000321728
1a
ENSE00001400169
chr16:
23847322-23847669
348
KPCB_HUMAN
1-58
58
0
-
-
1.2b
ENST00000321728
2b
ENSE00001678439
chr16:
23848696-23848727
32
KPCB_HUMAN
58-69
12
0
-
-
1.4
ENST00000321728
4
ENSE00001699103
chr16:
23999829-23999911
83
KPCB_HUMAN
69-96
28
0
-
-
1.5b
ENST00000321728
5b
ENSE00001242819
chr16:
24043457-24043568
112
KPCB_HUMAN
97-134
38
0
-
-
1.6
ENST00000321728
6
ENSE00001242813
chr16:
24046740-24046868
129
KPCB_HUMAN
134-177
44
0
-
-
1.7c
ENST00000321728
7c
ENSE00001242806
chr16:
24104112-24104268
157
KPCB_HUMAN
177-229
53
0
-
-
1.8
ENST00000321728
8
ENSE00001122611
chr16:
24105484-24105618
135
KPCB_HUMAN
229-274
46
0
-
-
1.10b
ENST00000321728
10b
ENSE00001122545
chr16:
24124294-24124390
97
KPCB_HUMAN
274-306
33
0
-
-
1.11
ENST00000321728
11
ENSE00001242785
chr16:
24135156-24135302
147
KPCB_HUMAN
307-355
49
2
A:339-355
B:339-355
17
17
1.13
ENST00000321728
13
ENSE00001772524
chr16:
24166005-24166178
174
KPCB_HUMAN
356-413
58
2
A:356-413
B:356-413
58
58
1.14b
ENST00000321728
14b
ENSE00001103616
chr16:
24183591-24183682
92
KPCB_HUMAN
414-444
31
2
A:414-444
B:414-444
31
31
1.15b
ENST00000321728
15b
ENSE00001103624
chr16:
24185839-24185901
63
KPCB_HUMAN
444-465
22
2
A:444-465
B:444-465
22
22
1.16b
ENST00000321728
16b
ENSE00001103597
chr16:
24192111-24192249
139
KPCB_HUMAN
465-511
47
2
A:465-511
B:465-511
47
47
1.17
ENST00000321728
17
ENSE00001608151
chr16:
24196432-24196512
81
KPCB_HUMAN
512-538
27
2
A:512-538
B:512-538
27
27
1.18a
ENST00000321728
18a
ENSE00001103596
chr16:
24196781-24196888
108
KPCB_HUMAN
539-574
36
2
A:539-574
B:539-574
36
36
1.19a
ENST00000321728
19a
ENSE00001242743
chr16:
24202411-24202551
141
KPCB_HUMAN
575-621
47
2
A:575-621
B:575-621
47
47
1.20b
ENST00000321728
20b
ENSE00001242827
chr16:
24231282-24231932
651
KPCB_HUMAN
622-671
50
2
A:622-669 (gaps)
B:651-669
49
19
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2i0ea_ (A:)
1b: SCOP_d2i0eb_ (B:)
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(
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(
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(
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(
)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d2i0ea_
A:
1b
d2i0eb_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2i0eB01 (B:339-422,B:620-669)
1b: CATH_2i0eA01 (A:339-426,A:621-659)
2a: CATH_2i0eB02 (B:423-619)
2b: CATH_2i0eA02 (A:427-620)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2i0eB01
B:339-422,B:620-669
1b
2i0eA01
A:339-426,A:621-659
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
2i0eB02
B:423-619
2b
2i0eA02
A:427-620
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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