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2HZC
Asym. Unit
Info
Asym.Unit (45 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (79 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE N-TERMINAL RRM OF THE U2AF LARGE SUBUNIT
Authors
:
K. R. Thickman, E. A. Sickmier, C. L. Kielkopf
Date
:
08 Aug 06 (Deposition) - 29 Aug 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.47
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Rna Splicing, Rrm, Rna Recognition, Alternative Conformation, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. R. Thickman, E. A. Sickmier, C. L. Kielkopf
Alternative Conformations At The Rna-Binding Surface Of The N-Terminal U2Af(65) Rna Recognition Motif.
J. Mol. Biol. V. 366 703 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: HEXAETHYLENE GLYCOL (P6Ga)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
P6G
1
Ligand/Ion
HEXAETHYLENE GLYCOL
2
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:162 , HOH A:317 , HOH A:390
BINDING SITE FOR RESIDUE ZN A 302
2
AC2
SOFTWARE
GLU A:163 , ASP A:167 , PRO A:229 , HOH A:326 , HOH A:329
BINDING SITE FOR RESIDUE ZN A 303
3
AC3
SOFTWARE
GLN A:172 , ARG A:203 , SER A:204 , ALA A:213 , PHE A:214 , ASP A:215 , GLY A:216 , ILE A:218 , HOH A:319 , HOH A:340 , HOH A:364 , HOH A:370 , HOH A:378 , HOH A:404
BINDING SITE FOR RESIDUE P6G A 301
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RRM (A:149-229|-|-)
;
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
U2AF2_HUMAN
149-231
259-337
385-466
1
A:149-229
-
-
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Exons
(3, 3)
Info
All Exons
Exon 1.5 (A:143-162 (gaps))
Exon 1.6 (A:163-201)
Exon 1.7 (A:202-229)
View:
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All Exon Boundaries
1: Boundary 1.4/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000308924
1
ENSE00001247615
chr19:
56165416-56166519
1104
U2AF2_HUMAN
1-17
17
0
-
-
1.2
ENST00000308924
2
ENSE00001172989
chr19:
56170576-56170711
136
U2AF2_HUMAN
17-62
46
0
-
-
1.3
ENST00000308924
3
ENSE00000953888
chr19:
56171543-56171587
45
U2AF2_HUMAN
62-77
16
0
-
-
1.4
ENST00000308924
4
ENSE00001172973
chr19:
56171882-56171985
104
U2AF2_HUMAN
77-112
36
0
-
-
1.5
ENST00000308924
5
ENSE00001178740
chr19:
56172404-56172555
152
U2AF2_HUMAN
112-162
51
1
A:143-162 (gaps)
30
1.6
ENST00000308924
6
ENSE00001172954
chr19:
56173868-56173984
117
U2AF2_HUMAN
163-201
39
1
A:163-201
39
1.7
ENST00000308924
7
ENSE00001172945
chr19:
56174972-56175110
139
U2AF2_HUMAN
202-248
47
1
A:202-229
28
1.8
ENST00000308924
8
ENSE00000876731
chr19:
56179873-56179952
80
U2AF2_HUMAN
248-274
27
0
-
-
1.9
ENST00000308924
9
ENSE00001178763
chr19:
56180036-56180158
123
U2AF2_HUMAN
275-315
41
0
-
-
1.10b
ENST00000308924
10b
ENSE00001172923
chr19:
56180449-56180547
99
U2AF2_HUMAN
316-348
33
0
-
-
1.11
ENST00000308924
11
ENSE00001178717
chr19:
56180810-56181058
249
U2AF2_HUMAN
349-431
83
0
-
-
1.12
ENST00000308924
12
ENSE00001320361
chr19:
56185300-56186081
782
U2AF2_HUMAN
432-475
44
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2hzca_ (A:)
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Classes
(
)
(
)
Folds
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
Splicing factor U2AF 65 KDa subunit
(8)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d2hzca_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2hzcA00 (A:143-229)
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Organisms
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)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.330, no name defined]
(307)
Human (Homo sapiens)
(81)
1a
2hzcA00
A:143-229
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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