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2HZ9
Asym. Unit
Info
Asym.Unit (56 KB)
Biol.Unit 1 (27 KB)
Biol.Unit 2 (27 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LYS12VAL/ASN95VAL/CYS117VAL MUTANT OF HUMAN ACIDIC FIBROBLAST GROWTH FACTOR AT 1.70 ANGSTROM RESOLUTION.
Authors
:
V. K. Dubey, J. Lee, T. Somasundaram, M. Blaber
Date
:
08 Aug 06 (Deposition) - 19 Jun 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta-Trefoil, Hormone/Growth Factor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. K. Dubey, J. Lee, T. Somasundaram, S. Blaber, M. Blaber
Spackling The Crack: Stabilizing Human Fibroblast Growth Factor-1 By Targeting The N And C Terminus Beta-Strand Interactions
J. Mol. Biol. V. 371 256 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: FORMIC ACID (FMTa)
1b: FORMIC ACID (FMTb)
1c: FORMIC ACID (FMTc)
1d: FORMIC ACID (FMTd)
2a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FMT
4
Ligand/Ion
FORMIC ACID
2
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:18 , LYS A:112 , LYS A:113 , HOH A:187
BINDING SITE FOR RESIDUE SO4 A 141
2
AC2
SOFTWARE
GLN A:127 , LYS A:128 , ALA A:129
BINDING SITE FOR RESIDUE FMT A 142
3
AC3
SOFTWARE
ASN B:18 , LYS B:113 , LYS B:118 , FMT B:143
BINDING SITE FOR RESIDUE FMT B 141
4
AC4
SOFTWARE
HIS B:1C , HIS B:1D , HIS B:1E , HOH B:214
BINDING SITE FOR RESIDUE FMT B 142
5
AC5
SOFTWARE
LYS B:118 , GLN B:127 , LYS B:128 , ALA B:129 , FMT B:141
BINDING SITE FOR RESIDUE FMT B 143
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_021357 (G6E, chain A/B, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021357
G
21
E
FGF1_HUMAN
Polymorphism
17223632
A/B
G
6
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: HBGF_FGF (A:71-94,B:71-94)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HBGF_FGF
PS00247
HBGF/FGF family signature.
FGF1_HUMAN
86-109
2
A:71-94
B:71-94
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Exons
(3, 6)
Info
All Exons
Exon 1.8b (A:1C-42 | B:1B-42)
Exon 1.9b (A:42-76 | B:42-76)
Exon 1.10f (A:77-137 | B:77-137)
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All Exon Boundaries
1: Boundary 1.3/1.8b
2: Boundary 1.8b/1.9b
3: Boundary 1.9b/1.10f
4: Boundary 1.10f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000378046
3
ENSE00001476010
chr5:
142065237-142065079
159
FGF1_HUMAN
-
0
0
-
-
1.8b
ENST00000378046
8b
ENSE00002155500
chr5:
141993726-141993524
203
FGF1_HUMAN
1-57
57
2
A:1C-42
B:1B-42
46
47
1.9b
ENST00000378046
9b
ENSE00000766692
chr5:
141980370-141980267
104
FGF1_HUMAN
57-91
35
2
A:42-76
B:42-76
35
35
1.10f
ENST00000378046
10f
ENSE00001476009
chr5:
141975049-141972934
2116
FGF1_HUMAN
92-155
64
2
A:77-137
B:77-137
61
61
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2hz9a_ (A:)
1b: SCOP_d2hz9b_ (B:)
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Protein Domains
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Cytokine
(169)
Family
:
Fibroblast growth factors (FGF)
(120)
Protein domain
:
Acidic FGF (FGF1)
(88)
Human (Homo sapiens) [TaxId: 9606]
(84)
1a
d2hz9a_
A:
1b
d2hz9b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2hz9B00 (B:1B-137)
1b: CATH_2hz9A00 (A:1C-137)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Trefoil
(289)
Topology
:
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(289)
Homologous Superfamily
:
[code=2.80.10.50, no name defined]
(289)
Human (Homo sapiens)
(131)
1a
2hz9B00
B:1B-137
1b
2hz9A00
A:1C-137
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (56 KB)
Header - Asym.Unit
Biol.Unit 1 (27 KB)
Header - Biol.Unit 1
Biol.Unit 2 (27 KB)
Header - Biol.Unit 2
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