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2HYU
Asym. Unit
Info
Asym.Unit (67 KB)
Biol.Unit 1 (62 KB)
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(1)
Title
:
HUMAN ANNEXIN A2 WITH HEPARIN TETRASACCHARIDE BOUND
Authors
:
C. Shao, J. F. Head, B. A. Seaton
Date
:
07 Aug 06 (Deposition) - 05 Sep 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Calcium-Binding Protein, Membrane-Binding Protein, Helix Bundle, Heparin, Tetrasaccharide, Metal Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Shao, F. Zhang, M. M. Kemp, R. J. Linhardt, D. M. Waisman, J. F. Head, B. A. Seaton
Crystallographic Analysis Of Calcium-Dependent Heparin Binding To Annexin A2.
J. Biol. Chem. V. 281 31689 2006
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
2a: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSa)
3a: N,O6-DISULFO-GLUCOSAMINE (SGNa)
3b: N,O6-DISULFO-GLUCOSAMINE (SGNb)
4a: 1,4-DIDEOXY-5-DEHYDRO-O2-SULFO-GLU... (UAPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
5
Ligand/Ion
CALCIUM ION
2
IDS
1
Ligand/Ion
2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
3
SGN
2
Ligand/Ion
N,O6-DISULFO-GLUCOSAMINE
4
UAP
1
Ligand/Ion
1,4-DIDEOXY-5-DEHYDRO-O2-SULFO-GLUCURONIC ACID
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:163 , GLY A:249 , ASP A:250 , LYS A:280 , GLY A:281 , SGN A:802 , HOH A:806 , HOH A:883 , HOH A:888 , HOH A:959 , HOH A:974 , HOH A:995
BINDING SITE FOR RESIDUE UAP A 801
2
AC2
SOFTWARE
SER A:163 , GLY A:164 , ASP A:165 , PHE A:166 , LEU A:251 , GLY A:281 , CA A:508 , UAP A:801 , IDS A:803 , HOH A:807 , HOH A:808 , HOH A:825 , HOH A:827 , HOH A:849 , HOH A:881 , HOH A:883 , HOH A:888 , HOH A:1009 , HOH A:1012 , HOH A:1169
BINDING SITE FOR RESIDUE SGN A 802
3
AC3
SOFTWARE
HIS A:93 , ASP A:321 , THR A:322 , LYS A:323 , CA A:508 , SGN A:802 , SGN A:804 , HOH A:808 , HOH A:849 , HOH A:861 , HOH A:1086 , HOH A:1107 , HOH A:1152 , HOH A:1201
BINDING SITE FOR RESIDUE IDS A 803
4
AC4
SOFTWARE
LYS A:323 , GLY A:324 , ASP A:325 , TYR A:326 , IDS A:803 , HOH A:822 , HOH A:944 , HOH A:999 , HOH A:1081 , HOH A:1083 , HOH A:1086 , HOH A:1122
BINDING SITE FOR RESIDUE SGN A 804
5
AC5
SOFTWARE
GLY A:49 , VAL A:50 , GLU A:52 , HOH A:809 , HOH A:810 , HOH A:811 , HOH A:812
BINDING SITE FOR RESIDUE CA A 501
6
AC6
SOFTWARE
LYS A:87 , LEU A:90 , GLU A:95 , HOH A:813 , HOH A:815 , HOH A:816
BINDING SITE FOR RESIDUE CA A 502
7
AC7
SOFTWARE
GLY A:201 , ARG A:204 , GLY A:206 , GLU A:246 , HOH A:817 , HOH A:818
BINDING SITE FOR RESIDUE CA A 505
8
AC8
SOFTWARE
MET A:277 , GLY A:279 , GLY A:281 , ASP A:321 , HOH A:805 , HOH A:806
BINDING SITE FOR RESIDUE CA A 507
9
AC9
SOFTWARE
THR A:282 , ASP A:321 , SGN A:802 , IDS A:803 , HOH A:807 , HOH A:808
BINDING SITE FOR RESIDUE CA A 508
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_012982 (V97L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_012982
V
98
L
ANXA2_HUMAN
Polymorphism
17845226
A
V
97
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ANNEXIN (A:49-101|A:121-173|A:206-258|A:281...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANNEXIN
PS00223
Annexins repeated domain signature.
ANXA2_HUMAN
50-102
122-174
207-259
282-334
4
A:49-101
A:121-173
A:206-258
A:281-333
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Exons
(11, 11)
Info
All Exons
Exon 1.5 (A:31-49)
Exon 1.6 (A:49-80)
Exon 1.7 (A:81-118)
Exon 1.8 (A:119-149)
Exon 1.9 (A:149-175)
Exon 1.10 (A:176-195)
Exon 1.11 (A:196-227)
Exon 1.12 (A:227-259)
Exon 1.13 (A:259-278)
Exon 1.14 (A:279-319)
Exon 1.15c (A:320-338)
View:
Select:
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All Exon Boundaries
01: Boundary 1.4/1.5
02: Boundary 1.5/1.6
03: Boundary 1.6/1.7
04: Boundary 1.7/1.8
05: Boundary 1.8/1.9
06: Boundary 1.9/1.10
07: Boundary 1.10/1.11
08: Boundary 1.11/1.12
09: Boundary 1.12/1.13
10: Boundary 1.13/1.14
11: Boundary 1.14/1.15c
12: Boundary 1.15c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000396024
1a
ENSE00001403067
chr15:
60690185-60690142
44
ANXA2_HUMAN
-
0
0
-
-
1.3
ENST00000396024
3
ENSE00001523610
chr15:
60682516-60682412
105
ANXA2_HUMAN
-
0
0
-
-
1.4
ENST00000396024
4
ENSE00002155732
chr15:
60678285-60678227
59
ANXA2_HUMAN
1-16
16
0
-
-
1.5
ENST00000396024
5
ENSE00001792486
chr15:
60674640-60674541
100
ANXA2_HUMAN
17-50
34
1
A:31-49
19
1.6
ENST00000396024
6
ENSE00001690061
chr15:
60656722-60656628
95
ANXA2_HUMAN
50-81
32
1
A:49-80
32
1.7
ENST00000396024
7
ENSE00001608158
chr15:
60653253-60653140
114
ANXA2_HUMAN
82-119
38
1
A:81-118
38
1.8
ENST00000396024
8
ENSE00001365712
chr15:
60649435-60649345
91
ANXA2_HUMAN
120-150
31
1
A:119-149
31
1.9
ENST00000396024
9
ENSE00001376738
chr15:
60648197-60648118
80
ANXA2_HUMAN
150-176
27
1
A:149-175
27
1.10
ENST00000396024
10
ENSE00001387355
chr15:
60646412-60646353
60
ANXA2_HUMAN
177-196
20
1
A:176-195
20
1.11
ENST00000396024
11
ENSE00001382815
chr15:
60644675-60644582
94
ANXA2_HUMAN
197-228
32
1
A:196-227
32
1.12
ENST00000396024
12
ENSE00001385247
chr15:
60644018-60643923
96
ANXA2_HUMAN
228-260
33
1
A:227-259
33
1.13
ENST00000396024
13
ENSE00001388601
chr15:
60643450-60643392
59
ANXA2_HUMAN
260-279
20
1
A:259-278
20
1.14
ENST00000396024
14
ENSE00001321115
chr15:
60641396-60641274
123
ANXA2_HUMAN
280-320
41
1
A:279-319
41
1.15c
ENST00000396024
15c
ENSE00001851616
chr15:
60639888-60639333
556
ANXA2_HUMAN
321-339
19
1
A:320-338
19
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2hyua_ (A:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Annexin
(61)
Superfamily
:
Annexin
(61)
Family
:
automated matches
(5)
Protein domain
:
automated matches
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d2hyua_
A:
[
close SCOP info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2hyuA01 (A:31-103)
1b: CATH_2hyuA04 (A:265-338)
1c: CATH_2hyuA02 (A:104-183)
1d: CATH_2hyuA03 (A:184-264)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Annexin V; domain 1
(80)
Homologous Superfamily
:
[code=1.10.220.10, no name defined]
(58)
Human (Homo sapiens)
(22)
1a
2hyuA01
A:31-103
1b
2hyuA04
A:265-338
1c
2hyuA02
A:104-183
1d
2hyuA03
A:184-264
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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