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Getting 'Exon' information from database.
2HXY
Asym. Unit
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Asym.Unit (252 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (65 KB)
Biol.Unit 3 (65 KB)
Biol.Unit 4 (65 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN APO-EIF4AIII
Authors
:
J. S. Johansen, G. R. Andersen
Date
:
04 Aug 06 (Deposition) - 15 Aug 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Helicase, Atpase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. B. Andersen, L. Ballut, J. S. Johansen, H. Chamieh, K. H. Nielsen, C. L. Oliveira, J. S. Pedersen, B. Seraphin, H. Le Hir, G. R. Andersen
Structure Of The Exon Junction Core Complex With A Trapped Dead-Box Atpase Bound To Rna.
Science V. 313 1968 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071090 (D270G, chain A/B/C/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071090
D
270
G
IF4A3_HUMAN
Disease (RCPS)
---
A/B/C/D
D
270
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: Q_MOTIF (A:38-66,B:38-66,C:38-66,D:38-66)
2: DEAD_ATP_HELICASE (A:185-193,B:185-193,C:185-193,D:18...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
Q_MOTIF
PS51195
DEAD-box RNA helicase Q motif profile.
IF4A3_HUMAN
38-66
4
A:38-66
B:38-66
C:38-66
D:38-66
2
DEAD_ATP_HELICASE
PS00039
DEAD-box subfamily ATP-dependent helicases signature.
IF4A3_HUMAN
185-193
4
A:185-193
B:185-193
C:185-193
D:185-193
[
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Exons
(12, 48)
Info
All Exons
Exon 1.1 (A:38-57 | B:38-57 | C:38-57 | D:38...)
Exon 1.2 (A:57-81 | B:57-81 | C:57-81 | D:57...)
Exon 1.3 (A:81-103 | B:81-103 | C:81-103 | D...)
Exon 1.4 (A:104-124 | B:104-124 | C:104-124 ...)
Exon 1.5 (A:125-169 | B:125-169 | C:125-169 ...)
Exon 1.6 (A:169-196 | B:169-196 | C:169-196 ...)
Exon 1.7 (A:196-243 | B:196-243 | C:196-243 ...)
Exon 1.8 (A:243-289 | B:243-289 | C:243-289 ...)
Exon 1.9 (A:290-328 | B:290-328 | C:290-328 ...)
Exon 1.10 (A:328-364 | B:328-364 | C:328-364 ...)
Exon 1.11 (A:364-407 | B:364-407 | C:364-407 ...)
Exon 1.12 (A:407-411 | B:407-411 | C:407-411 ...)
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary 1.12/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000269349
1
ENSE00001213025
chr17:
78120938-78120592
347
IF4A3_HUMAN
1-57
57
4
A:38-57
B:38-57
C:38-57
D:38-57
20
20
20
20
1.2
ENST00000269349
2
ENSE00000949585
chr17:
78118043-78117971
73
IF4A3_HUMAN
57-81
25
4
A:57-81
B:57-81
C:57-81
D:57-81
25
25
25
25
1.3
ENST00000269349
3
ENSE00000949586
chr17:
78115647-78115581
67
IF4A3_HUMAN
81-103
23
4
A:81-103
B:81-103
C:81-103
D:81-103
23
23
23
23
1.4
ENST00000269349
4
ENSE00000949587
chr17:
78115180-78115118
63
IF4A3_HUMAN
104-124
21
4
A:104-124
B:104-124
C:104-124
D:104-124
21
21
21
21
1.5
ENST00000269349
5
ENSE00001303885
chr17:
78113939-78113807
133
IF4A3_HUMAN
125-169
45
4
A:125-169
B:125-169
C:125-169
D:125-169
45
45
45
45
1.6
ENST00000269349
6
ENSE00000949589
chr17:
78113549-78113469
81
IF4A3_HUMAN
169-196
28
4
A:169-196
B:169-196
C:169-196
D:169-196
28
28
28
28
1.7
ENST00000269349
7
ENSE00000949591
chr17:
78112961-78112820
142
IF4A3_HUMAN
196-243
48
4
A:196-243
B:196-243
C:196-243
D:196-243
48
48
48
48
1.8
ENST00000269349
8
ENSE00001212947
chr17:
78112079-78111941
139
IF4A3_HUMAN
243-289
47
4
A:243-289
B:243-289
C:243-289
D:243-289
47
47
47
47
1.9
ENST00000269349
9
ENSE00001212937
chr17:
78111300-78111185
116
IF4A3_HUMAN
290-328
39
4
A:290-328
B:290-328
C:290-328
D:290-328
39
39
39
39
1.10
ENST00000269349
10
ENSE00000949595
chr17:
78110134-78110027
108
IF4A3_HUMAN
328-364
37
4
A:328-364
B:328-364
C:328-364
D:328-364
37
37
37
37
1.11
ENST00000269349
11
ENSE00001213013
chr17:
78109930-78109803
128
IF4A3_HUMAN
364-407
44
4
A:364-407
B:364-407
C:364-407
D:364-407
44
44
44
44
1.12
ENST00000269349
12
ENSE00001318045
chr17:
78109305-78109019
287
IF4A3_HUMAN
407-411
5
4
A:407-411
B:407-411
C:407-411
D:407-411
5
5
5
5
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SCOP Domains
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Pfam Domains
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Show PDB file:
Asym.Unit (252 KB)
Header - Asym.Unit
Biol.Unit 1 (65 KB)
Header - Biol.Unit 1
Biol.Unit 2 (65 KB)
Header - Biol.Unit 2
Biol.Unit 3 (65 KB)
Header - Biol.Unit 3
Biol.Unit 4 (65 KB)
Header - Biol.Unit 4
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