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Asym. Unit
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Asym.Unit (42 KB)
Biol.Unit 1 (19 KB)
Biol.Unit 2 (19 KB)
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(1)
Title
:
STRUCTURE OF PIN DOMAIN OF HUMAN SMG5.
Authors
:
F. Glavan, I. Behm-Ansmant, E. Izaurralde, E. Conti
Date
:
02 Aug 06 (Deposition) - 14 Nov 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Rna Degradation, Decay, Nmd, Est1A, P Bodies, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Glavan, I. Behm-Ansmant, E. Izaurralde, E. Conti
Structures Of The Pin Domains Of Smg6 And Smg5 Reveal A Nuclease Within The Mrna Surveillance Complex.
Embo J. V. 25 5117 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_030828 (N1004D, chain A/B, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_030828
N
1004
D
SMG5_HUMAN
Polymorphism
17853821
A/B
N
1004
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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;
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End label:
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Exons
(5, 10)
Info
All Exons
Exon 1.18c (A:855-888 | B:855-888)
Exon 1.19b (A:888-918 (gaps) | B:888-918 (gaps...)
Exon 1.20a (A:918-923 | B:918-925)
Exon 1.20d (A:945-986 (gaps) | B:944-983 (gaps...)
Exon 1.21c (A:991-1012 | B:993-1013 (gaps))
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All Exon Boundaries
1: Boundary 1.17b/1.18c
2: Boundary 1.18c/1.19b
3: Boundary 1.19b/1.20a
4: Boundary 1.20a/1.20d
5: Boundary 1.20d/1.21c
6: Boundary 1.21c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000361813
1a
ENSE00001446734
chr1:
156252616-156252398
219
SMG5_HUMAN
1-25
25
0
-
-
1.2
ENST00000361813
2
ENSE00001196892
chr1:
156248825-156248727
99
SMG5_HUMAN
25-58
34
0
-
-
1.3
ENST00000361813
3
ENSE00001075011
chr1:
156247839-156247716
124
SMG5_HUMAN
58-99
42
0
-
-
1.4
ENST00000361813
4
ENSE00001075015
chr1:
156247032-156246876
157
SMG5_HUMAN
100-152
53
0
-
-
1.5
ENST00000361813
5
ENSE00001075017
chr1:
156244477-156244388
90
SMG5_HUMAN
152-182
31
0
-
-
1.6
ENST00000361813
6
ENSE00001054407
chr1:
156243241-156243152
90
SMG5_HUMAN
182-212
31
0
-
-
1.7
ENST00000361813
7
ENSE00001054410
chr1:
156242189-156242111
79
SMG5_HUMAN
212-238
27
0
-
-
1.8
ENST00000361813
8
ENSE00001054405
chr1:
156238206-156238081
126
SMG5_HUMAN
238-280
43
0
-
-
1.9
ENST00000361813
9
ENSE00001054409
chr1:
156237974-156237906
69
SMG5_HUMAN
280-303
24
0
-
-
1.10a
ENST00000361813
10a
ENSE00001054402
chr1:
156237469-156237261
209
SMG5_HUMAN
303-373
71
0
-
-
1.11a
ENST00000361813
11a
ENSE00001054413
chr1:
156236469-156236332
138
SMG5_HUMAN
373-419
47
0
-
-
1.12b
ENST00000361813
12b
ENSE00001054417
chr1:
156236171-156235572
600
SMG5_HUMAN
419-619
201
0
-
-
1.13
ENST00000361813
13
ENSE00001054406
chr1:
156233361-156233186
176
SMG5_HUMAN
619-677
59
0
-
-
1.14
ENST00000361813
14
ENSE00001054400
chr1:
156231199-156231124
76
SMG5_HUMAN
678-703
26
0
-
-
1.15
ENST00000361813
15
ENSE00001054416
chr1:
156230417-156230242
176
SMG5_HUMAN
703-761
59
0
-
-
1.16
ENST00000361813
16
ENSE00001054412
chr1:
156228954-156228796
159
SMG5_HUMAN
762-814
53
0
-
-
1.17b
ENST00000361813
17b
ENSE00001054408
chr1:
156223299-156223240
60
SMG5_HUMAN
815-834
20
0
-
-
1.18c
ENST00000361813
18c
ENSE00001054415
chr1:
156222869-156222710
160
SMG5_HUMAN
835-888
54
2
A:855-888
B:855-888
34
34
1.19b
ENST00000361813
19b
ENSE00001054404
chr1:
156222295-156222205
91
SMG5_HUMAN
888-918
31
2
A:888-918 (gaps)
B:888-918 (gaps)
31
31
1.20a
ENST00000361813
20a
ENSE00001054403
chr1:
156221268-156221194
75
SMG5_HUMAN
918-943
26
2
A:918-923
B:918-925
6
8
1.20d
ENST00000361813
20d
ENSE00001054418
chr1:
156220787-156220649
139
SMG5_HUMAN
943-989
47
2
A:945-986 (gaps)
B:944-983 (gaps)
42
40
1.21c
ENST00000361813
21c
ENSE00001446733
chr1:
156220461-156219015
1447
SMG5_HUMAN
990-1016
27
2
A:991-1012
B:993-1013 (gaps)
22
21
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Asym.Unit (42 KB)
Header - Asym.Unit
Biol.Unit 1 (19 KB)
Header - Biol.Unit 1
Biol.Unit 2 (19 KB)
Header - Biol.Unit 2
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